View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14758_high_9 (Length: 441)
Name: NF14758_high_9
Description: NF14758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14758_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 363; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 39 - 425
Target Start/End: Complemental strand, 7329990 - 7329604
Alignment:
| Q |
39 |
ctagaacataaccacaaagtaaatgatgtgaagtgtttcattattctcaagtttatagcatcttataacatgccaacaagttgcaaactgtagtgcttgg |
138 |
Q |
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| T |
7329990 |
ctagaacataaacacaaagtaaatgatgtgaagtgtttcatcattctcaagtttatagcatcttataatatgccaacaagttgcaaactgtagtgcttgg |
7329891 |
T |
|
| Q |
139 |
aactatcagatatgtactgcagtggtaatttcataatagagttttcctcattctcaagtttccaaagctcatttcattcatttcagattcattagttaca |
238 |
Q |
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| T |
7329890 |
aactatcagatatgtactgcagtggtaatttcctaatagagttttcctcattctcaagtttccaaagttcatttcattcatttcagattcattagttaca |
7329791 |
T |
|
| Q |
239 |
tgaccttaaatcagaactggatgcatcagactttgtgatcagatttatagaatattgttgtgttgcatcgctattgtcgctactaaagcaaaccttttct |
338 |
Q |
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| T |
7329790 |
tgaccttaaatcagaactggatgcatcagactttgtgatcagatttatagaatattgttgtgttgcattgctattgtcgctactaaagcaaaccttttct |
7329691 |
T |
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| Q |
339 |
agagaagtgtcaatacatcctaaacaaacagattctaactcataagataaaatcatatcataccagatgcacaactatgatacaata |
425 |
Q |
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| T |
7329690 |
agagaagtgtcaatacatcctaaacaaacagattctaactcataagataaaatcatatcataccagatgcacaactatgatacaata |
7329604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 165 - 386
Target Start/End: Original strand, 7310115 - 7310334
Alignment:
| Q |
165 |
aatttcataatagagttttcctcattctcaagtttccaaagctcatttcattcattt-cagattcattagttacatgaccttaaatcagaactggatgca |
263 |
Q |
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| T |
7310115 |
aatttgataataaagttttcccctttctcaagtttccgaagttcttctaattcattttcagatgcatcagtaacatgaccctaaatcagaactggatgca |
7310214 |
T |
|
| Q |
264 |
tcagactttgtgatcagatttatagaatattgttgtgttgcatcgctattgtcgctactaaagcaaaccttttctagagaagtgtcaatacatcctaaac |
363 |
Q |
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| T |
7310215 |
tcagactttgtgatcagatttatagaatattgttg---tgcatcgctattgtcgcaactaaagcaaaacttttcgagataagtgtcaatacatcctaaac |
7310311 |
T |
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| Q |
364 |
aaacagattctaactcataagat |
386 |
Q |
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| T |
7310312 |
aaacagattctaactcagaagat |
7310334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 219 - 299
Target Start/End: Original strand, 7300846 - 7300924
Alignment:
| Q |
219 |
tttcagattcattagttacatgaccttaaatcagaactggatgcatcagactttgtgatcagatttatagaatattgttgt |
299 |
Q |
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|||| ||| ||||||| |||||||| ||||||||||||||||||||||||| || ||||| ||||| ||||| ||||||| |
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| T |
7300846 |
tttcggatgcattagtaacatgaccctaaatcagaactggatgcatcagac--tgcgatcaaatttacagaatgttgttgt |
7300924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 56 - 149
Target Start/End: Original strand, 7309996 - 7310079
Alignment:
| Q |
56 |
agtaaatgatgtgaagtgtttcattattctcaagtttatagcatcttataacatgccaacaagttgcaaactgtagtgcttggaactatcagat |
149 |
Q |
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| T |
7309996 |
agtaaatcatgtgaagtgtttcattattctcaagattatag----------cctgccaacaagttacaaaatgtagtgcttggaacaatcagat |
7310079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 215
Target Start/End: Original strand, 22482274 - 22482321
Alignment:
| Q |
168 |
ttcataatagagttttcctcattctcaagtttccaaagctcatttcat |
215 |
Q |
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| T |
22482274 |
ttcataatagagttttcccgattcttaactttccaaagctcatttcat |
22482321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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