View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14758_low_1 (Length: 738)
Name: NF14758_low_1
Description: NF14758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14758_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 526; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 17 - 604
Target Start/End: Original strand, 39418311 - 39418904
Alignment:
| Q |
17 |
agtatttggcataagctaccagtaagaagctagtggatgtgacatactgcatgttactatcactcatcttgaacaaaagcccacctgtaaagtttcacaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39418311 |
agtatttggcataagctaccagtaagaagctagtggatgtgacatactgcatgttactatcactcatcttgaacaaaagcccacctgtaaagtttcacaa |
39418410 |
T |
|
| Q |
117 |
gctcaaaaacagttacatcttggaccacatgaaaccaatagcgttaatactgaaagagaagaaagagggaccttaccaggggtatattgtgcagaagagg |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39418411 |
gctcaaaaacagttacatcttggaccacatgaaaccaatagagttaatactgaaagagaagaaagagggaccttaccaggggtatattgtgcagaagagg |
39418510 |
T |
|
| Q |
217 |
atccagctccaggaattaaagagcaaacaaaattgtctgaatgacccttgtagtcatggagggatcttaccctttgaactagaaattcctaaaaccac-- |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
39418511 |
atccagctccaggaattaaagagcaaacaaaattgtctgaatgacccttgtagtcatggagggatcttaccctttgaactagaaattcctaaaatcacaa |
39418610 |
T |
|
| Q |
315 |
----aaaatnnnnnnncatgttaggtttaaaacattattgataatttgtttgatactatgttgtcaaatttaggacctttgaaagaagtatccttgctcc |
410 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
39418611 |
aaaaaaaaaaaaaaaacatgttagttttaaaacattattgataatttgtttgatactatgttgtgaaatttaggacctttgaaagaagtatccttgctcc |
39418710 |
T |
|
| Q |
411 |
aacatgtttgttatcccaaccaaatgtgttgtcaaactctgctgctcctaggatttgaccattaacttgaatgtaatttaggtacattggattctttgta |
510 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39418711 |
aacatgtttgttatcccaaccaaatgtgttgtcaaactctgctgctcctaggatttgaccattaacttgaatgtaatttaggtacattggattctttgtg |
39418810 |
T |
|
| Q |
511 |
gctttgtgtaaccaagcagcaccccacaacaactcatcctaacaagtcattacaaacccatcagtcaaaagtactataattttgagtatgactc |
604 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39418811 |
gctttgtgtaaccaagcagcaccccacaacaactcatcctaacaagtcattacaaacccatcagtcaaaagtactataattttgagtatgactc |
39418904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 650 - 721
Target Start/End: Original strand, 39418950 - 39419021
Alignment:
| Q |
650 |
ctttacctgataaccagagtaatcacagtaaaagggacacacaaagggttttaagacattgctgtaaggtcc |
721 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39418950 |
ctttacctgataaccagagtaatcccagtaaaagggacacacaaagggttttaagacattgctgtaaggtcc |
39419021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 376 - 549
Target Start/End: Complemental strand, 44512079 - 44511906
Alignment:
| Q |
376 |
aaatttaggacctttgaaagaagtatccttgctccaacatgtttgttatcccaaccaaatgtgttgtcaaactctgctgctcctaggatttgaccattaa |
475 |
Q |
| |
|
|||||| ||||||| ||||| ||||||||||||||| |||||||||||||||| ||||| || || ||| | | | || || | || || ||||||| |
|
|
| T |
44512079 |
aaattttggaccttagaaaggagtatccttgctccagcatgtttgttatcccatccaaaggtattatcagtcacatcagccccatgtatctgtccattaa |
44511980 |
T |
|
| Q |
476 |
cttgaatgtaatttaggtacattggattctttgtagctttgtgtaaccaagcagcaccccacaacaactcatcc |
549 |
Q |
| |
|
| | |||||| |||| ||||||| | ||||| || || ||||| | |||||||||||||||||||||||||||| |
|
|
| T |
44511979 |
ccttaatgtagtttaagtacattaggttcttagtggccttgtgaagccaagcagcaccccacaacaactcatcc |
44511906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 95
Target Start/End: Complemental strand, 44513104 - 44513058
Alignment:
| Q |
49 |
gtggatgtgacatactgcatgttactatcactcatcttgaacaaaag |
95 |
Q |
| |
|
||||| |||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
44513104 |
gtggacgtgacatattgcatgttactatcattcatcttgaacaaaag |
44513058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University