View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14758_low_10 (Length: 461)
Name: NF14758_low_10
Description: NF14758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14758_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 18 - 449
Target Start/End: Original strand, 8138972 - 8139395
Alignment:
| Q |
18 |
aaattaaaactatttgatctctatttcgaatgctaagnnnnnnnntaatgggaaaaattattcttccgtaacagttctaaagtttctgtggctctcatct |
117 |
Q |
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| T |
8138972 |
aaattaaaactatttgatctctatttcgaatgctaagaaaaaaaataatgggaaaaattattcttccgtaacagttctaaagtttctgtggctctcatct |
8139071 |
T |
|
| Q |
118 |
aattgttt-atgtatgcactatcagttaatacatggctgactttggaatgatgtctcagttttgtataaatgatgaatctatgctttggaatgatggatg |
216 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8139072 |
aattgttttatgtatgcactatcagttaatacatggctgactttggaattatgtctcagttttgtataaatgatgaatctatgctttggaatgatggatg |
8139171 |
T |
|
| Q |
217 |
tctcagttttttatgtttcttgatcattaagtataaatcttaatcatttatgtaaaaatctttctcatttatttaaaaatcttgatcatttatttctgca |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8139172 |
tctcagttttttatgtttcttgatcattaagtataaatcttaatcatttatgtaaaaatctttctcatttatttaaaaatcttgatcatttatttctgca |
8139271 |
T |
|
| Q |
317 |
atcatgatcatttccatgaatgatgaatctgtgtttttgaagcgcatctgttgannnnnnnnnnnnnnnnattgagtctttgttactgaatgcatgcttg |
416 |
Q |
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| T |
8139272 |
atcatgatcatttctatgaatgatgaatctgtgtttttgaagcgcatctgttgatttttttt---------tttagtctttgttactgaatgcatgcttg |
8139362 |
T |
|
| Q |
417 |
aatatcactgtttttggaacgatgtctctgctc |
449 |
Q |
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| T |
8139363 |
aatatcactgtttttggaatgatgtctctgctc |
8139395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 268 - 449
Target Start/End: Complemental strand, 7499701 - 7499529
Alignment:
| Q |
268 |
gtaaaaatctttctcatttatttaaaaatcttgatcatttatttctgcaatcatgatcatttccatgaatgatgaatctgtgtttttgaagcgcatctgt |
367 |
Q |
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||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||| ||||||| |
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| T |
7499701 |
gtaaaaatcttaatcatttatctaaaaatctttatcatttatttctgcaatcatgatcacttctatgaatgatgaatctgtg-ttttgaagctcatctgt |
7499603 |
T |
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| Q |
368 |
tgannnnnnnnnnnnnnnnattgagtctttgttactgaatgcatgcttgaatatcactgtttttggaacgatgtctctgctc |
449 |
Q |
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| T |
7499602 |
tgattttttttt--------ttgagtctttgttactgaatgcatgcttgaacatcactgtttttggaatgatgtttctgctc |
7499529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 215 - 350
Target Start/End: Complemental strand, 7503107 - 7502967
Alignment:
| Q |
215 |
tgtctcagttttttatgtttcttgatcattaagtataaatcttaatcatttatgtaaaaatct---ttctcatttatttaaaaatcttgatcatttattt |
311 |
Q |
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|||| |||||||||||||||||||||||||||||| ||||| | ||||||||||||||||| | | |||||||| ||||||| |||||||||||||| |
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| T |
7503107 |
tgtcccagttttttatgtttcttgatcattaagtaaaaatcctgatcatttatgtaaaaatatcattaatcatttatgtaaaaatattgatcatttattt |
7503008 |
T |
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| Q |
312 |
ctgcaatc--atgatcatttccatgaatgatgaatctgtgt |
350 |
Q |
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| T |
7503007 |
ctgcaatcatatgatcacttctatgaatgatgaatctgtgt |
7502967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 63 - 179
Target Start/End: Complemental strand, 7499845 - 7499722
Alignment:
| Q |
63 |
taatgggaaaaattattcttccgtaacagttctaaagtttctgtggctctca-------tctaattgtttatgtatgcactatcagttaatacatggctg |
155 |
Q |
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| T |
7499845 |
taatgggaaaaattattcttcaataacagttctaaagtttctgtggctctgaagtctgatctaattgtttatatatgcactatctgttaatacatggctg |
7499746 |
T |
|
| Q |
156 |
actttggaatgatgtctcagtttt |
179 |
Q |
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||| |||||||||||||||||| |
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| T |
7499745 |
gttttagaatgatgtctcagtttt |
7499722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 393 - 443
Target Start/End: Complemental strand, 7502928 - 7502878
Alignment:
| Q |
393 |
tctttgttactgaatgcatgcttgaatatcactgtttttggaacgatgtct |
443 |
Q |
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||||||||||||| |||||||||| |||||||||||||||||| ||||||| |
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| T |
7502928 |
tctttgttactgattgcatgcttggatatcactgtttttggaatgatgtct |
7502878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 349
Target Start/End: Complemental strand, 7503160 - 7503119
Alignment:
| Q |
308 |
atttctgcaatcatgatcatttccatgaatgatgaatctgtg |
349 |
Q |
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| T |
7503160 |
atttctgcaatcatgatcacttctatgaatgatgaatttgtg |
7503119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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