View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14758_low_11 (Length: 458)
Name: NF14758_low_11
Description: NF14758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14758_low_11 |
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| [»] scaffold0147 (1 HSPs) |
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Alignment Details
Target: scaffold0147 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 16 - 458
Target Start/End: Complemental strand, 8594 - 8149
Alignment:
| Q |
16 |
ataatcaaaaccaaacatggaacataaaaagttagtatgatgataatgatggtcaatgaatgttttctcaaaaagtcaaaacaaataagtatgagagagg |
115 |
Q |
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| T |
8594 |
ataatcaaaaccaaacatggaacataaaaagttagtatgatgataatgatggtcaatgaatgttttctcaaaaagtcaaaacaaataagtatgagagagg |
8495 |
T |
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| Q |
116 |
acgaagtagttgaccatattggtttgtccacttgtgaatatgagggagcaaagttgtagtccagctatgagatatagaaacaaaaccatgttcttcttgn |
215 |
Q |
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| T |
8494 |
acaaagtagttgaccatattggtttgtccacttgtgaatatgagggagcaaagttgtagtccagctatgagatatagaaacaaaaccatgttcttcttgt |
8395 |
T |
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| Q |
216 |
nnnnnnngtttgacttgtgattgttgttggagtaaaagggtcttcatttctttgatgttaccaaagtagaaatgaggagaaggaccatcaataccttgcc |
315 |
Q |
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| T |
8394 |
tttttttgtttgacttgagattgttgttggagtaaaagggtcttcatttctttgatgttaccaaagtagaaatgaggagaaggaccatcaataccttgcc |
8295 |
T |
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| Q |
316 |
tatgaagctttgctcttagtgatcttggtctcaaaatcaaaacattcaaaaaatggatcaatgaaaccaaaactgctcctagagc---cacaagaacttc |
412 |
Q |
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| T |
8294 |
tatgaagctttgctcttagtgatcttggtctcaaaatcaaaacattcaaaaaatggatcaatgaaaccaaaactgctcctagagccatcacaagaacttc |
8195 |
T |
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| Q |
413 |
aataactatgctcattctcatacacaaattaacctcttccattacc |
458 |
Q |
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| T |
8194 |
aataactatgctcattctcatacacaaattaacctcttccattacc |
8149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 119 - 437
Target Start/End: Complemental strand, 19205473 - 19205146
Alignment:
| Q |
119 |
aagtagttgaccatattggtttgtccacttgtgaatatgagggagcaaagttgtagtccagctatgagatatagaaacaaaaccatgttc---------t |
209 |
Q |
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| T |
19205473 |
aagtagtttaccatattgttttctccacttgtgaatatgaggaaaaacagttgaagtccaactatgagatatagaagcacaaacatcttcatcttcatgt |
19205374 |
T |
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| Q |
210 |
tcttgnnnnnnnngtttgacttgtgattgttgttggagtaaaagggtcttcatttctttgatgttaccaaagtagaaatgaggagaaggaccatcaatac |
309 |
Q |
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| T |
19205373 |
tcttgtttgatttgtttgacttgtgtttgttgttggagtaaaagtgtcttcatctctttaatattaccaaagtaaaaatcaggagaaggtccatgaatac |
19205274 |
T |
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| Q |
310 |
cttgcctatgaagctttgctcttagtgatcttggtctcaaaatcaaaacattcaaaaaatggatcaatgaaaccaaaactgctcctagagccacaagaac |
409 |
Q |
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| T |
19205273 |
cctgtctatgaagctttgctcttaatgatcttagtctcaaaactaaaacatgtaaaaaatggatcagtgccaccaaaactgctacaagagcaaccataac |
19205174 |
T |
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| Q |
410 |
ttcaataactatgctcattctcatacac |
437 |
Q |
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| T |
19205173 |
ttcaacaactatgctcattctcaaacac |
19205146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 6e-44; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 236 - 430
Target Start/End: Complemental strand, 25192154 - 25191960
Alignment:
| Q |
236 |
ttgttgttggagtaaaagggtcttcatttctttgatgttaccaaagtagaaatgaggagaaggaccatcaataccttgcctatgaagctttgctcttagt |
335 |
Q |
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| T |
25192154 |
ttgttgttggtgtaaaagggtcttcatttcttggatattacccaagtaaaagtgaggagaagggccatgaataccctgcctatgtagctttgctctcaat |
25192055 |
T |
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| Q |
336 |
gatcttggtctcaaaatcaaaacattcaaaaaatggatcaatgaaaccaaaactgctcctagagccacaagaacttcaataactatgctcattct |
430 |
Q |
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| T |
25192054 |
gattttggtctccaaaccaaaacttgcaaaaaatggatcaatgcaaccaatactgctgcaagagccaccacaacttcaacacttatgctcattct |
25191960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 246 - 366
Target Start/End: Complemental strand, 1760492 - 1760372
Alignment:
| Q |
246 |
agtaaaagggtcttcatttctttgatgttaccaaagtagaaatgaggagaaggaccatcaataccttgcctatgaagctttgctcttagtgatcttggtc |
345 |
Q |
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| T |
1760492 |
agtaaaaggctcttcatttctgagatgttgccaaagtagaagtgaggagaaggtccatcaattccttgtttttgaagcttagctctaagggatcttggct |
1760393 |
T |
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| Q |
346 |
tcaaaatcaaaacattcaaaa |
366 |
Q |
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| T |
1760392 |
tcaaaacaaaaacatgcaaaa |
1760372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 120 - 192
Target Start/End: Complemental strand, 25192273 - 25192201
Alignment:
| Q |
120 |
agtagttgaccatattggtttgtccacttgtgaatatgagggagcaaagttgtagtccagctatgagatatag |
192 |
Q |
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| T |
25192273 |
agtagttaaccatattgacttctccatttctgaatatgagggaacaagcttgatgtccagctatgagatatag |
25192201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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