View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14758_low_15 (Length: 402)
Name: NF14758_low_15
Description: NF14758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14758_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 46 - 387
Target Start/End: Original strand, 26363948 - 26364291
Alignment:
| Q |
46 |
tggtaggagcataaacaaattgaagaaaaatgaatctatcaacagaaaagcagagtacaaaaacaaccaaaatggatcttattgaagactaattcaccaa |
145 |
Q |
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| T |
26363948 |
tggtaggagcataaacaaattgaagaaaaatgaatctattaacataaaagcagaatacaaaaacaaccaaaatggatcttattgaagactaattcaccaa |
26364047 |
T |
|
| Q |
146 |
tcaatggtctgaaaaaggcccaactataaagcaatgctttgaagctaacgaagaagcacaagtatatttgnnnnnnnnt--ggtagtacaagattctatt |
243 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
26364048 |
tcaatggtctgaaaaaggcccaactataaagcaatgctttgaagctaacgaagaagcacaagtatatttgaaaaaaaatatggtagtacaagattctatt |
26364147 |
T |
|
| Q |
244 |
catcataaaatcataatattttacatcagaattcagaatcacaaacttcttatgcgattaaatgtctcagcagacactttcatcattcccgagttacaaa |
343 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
26364148 |
catcataaaatcataatattttacatcagaattcagaatcacaaacttcttatgcgattaaatgtctcagccgacactttcatcattcccgagttacaaa |
26364247 |
T |
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| Q |
344 |
atgaagatgctaatgaattccatacagaaatttcaggaagcttt |
387 |
Q |
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| T |
26364248 |
atgaagatgctaatgaattccatacagaaatttcaggaagcttt |
26364291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 30 - 387
Target Start/End: Original strand, 26366480 - 26366837
Alignment:
| Q |
30 |
ttgttgcagataaaggtggtaggagcataaacaaattgaagaaaaatgaatctatcaacagaaaagcagagtacaaaaacaaccaaaatggatcttattg |
129 |
Q |
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| T |
26366480 |
ttgttgcagataaaggtggtagaagcataaacaaattgaagaaaaatgaaactttcaacagaaaagcaaagtacaaaa-caaccaaaatggatcttattg |
26366578 |
T |
|
| Q |
130 |
aagactaattcaccaa-tcaatggtctgaaaaaggcccaactataaagcaatgctttgaagctaacgaagaagcacaagtatatttgnnnnnnnntggta |
228 |
Q |
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|||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||| | ||| |
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| T |
26366579 |
aagactaattcaccaaatcaatggtctggaaaaggccaaactataaagcaatgctttaaagctaacgaagaagcatgagtatatttgaaaaaaaatagta |
26366678 |
T |
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| Q |
229 |
gtacaagattctattcatcataaaatcataatattttacatcagaattcagaatcacaaacttcttatgcgattaaatgtctcagcagacactttcatca |
328 |
Q |
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|| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
26366679 |
gttcaagattctattcattataaaatcataatattttacatcagaatccagaatcacaaactttttatgcgattaaatgtctcagcagacactttcatca |
26366778 |
T |
|
| Q |
329 |
ttcccgagttacaaaatgaagatgctaatgaattccatacagaaatttcaggaagcttt |
387 |
Q |
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| T |
26366779 |
tccccgagttacaaaatgaagatgctaatgaattccaaacagaaatttcaggaagcttt |
26366837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 3 - 387
Target Start/End: Complemental strand, 21055478 - 21055084
Alignment:
| Q |
3 |
gatcaatgtatgttgatagaggatatcttgttgcagataaaggtggtaggagcataaacaaattgaagaaaaatgaatctatcaacagaaaagcaga--- |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
21055478 |
gatcaatgtatgttgatagaggatatcttgttgcagataaaggtggtaggagcataaacaaattgaagaaaaatgaatctatcaacagaaaaagaaaaaa |
21055379 |
T |
|
| Q |
100 |
---gtacaaaaacaaccaaaatggatcttattgaagactaattcaccaa-tcaatggtctgaaaaaggcccaactataaagcaatgctttgaagctaacg |
195 |
Q |
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||||||||||| ||||||||||||||| |||||||| ||||||||| ||||||||||| |||||||| ||||||||||||||||||| ||||||| | |
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| T |
21055378 |
aaagtacaaaaacagccaaaatggatcttagtgaagactgattcaccaaatcaatggtctggaaaaggcc-aactataaagcaatgctttaaagctaatg |
21055280 |
T |
|
| Q |
196 |
aagaagcacaagtatatttgnnnnnnnn----tggtagtacaagattctattcatcataaaatcataatattttacatcagaattcagaatcacaaactt |
291 |
Q |
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|||||||| ||||||||||| | ||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
21055279 |
aagaagcataagtatatttgaaagaaaaaaaatagtaatacaagattctattcattataaaatcatattattttacatcagaattcagaatcacaaactt |
21055180 |
T |
|
| Q |
292 |
cttatgcgattaaatgtctcagcagacactttcatcattcccgagttacaaaatgaagatgctaatgaattccatacagaaatttcaggaagcttt |
387 |
Q |
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||||| |||| ||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21055179 |
cttatacgatcaaatgtctcagtagacactttcatcatccctgagttacaaaatgaagatgctaatgaattccatacagaaatttcaggaagcttt |
21055084 |
T |
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