View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14758_low_16 (Length: 393)
Name: NF14758_low_16
Description: NF14758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14758_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 16 - 378
Target Start/End: Complemental strand, 26142694 - 26142332
Alignment:
| Q |
16 |
aatataggttttacgcaataggggccaagggtgtggcatacttgtttctaaaatttcaaaagaaactaatgcttcttacactttgcaagatccatctgag |
115 |
Q |
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|||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26142694 |
aatataggttttacgcaataggggccaagggtgtgggattcttgtttcaaaaatttcaaaagaaactaatgcttcttacactttgcaagatccatctgag |
26142595 |
T |
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| Q |
116 |
gtaagaaattcaatcattaatcattatttatattttcatataaaactatataaaatcaaagatgtaactttcatataaattttgtatataggttggagaa |
215 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |
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| T |
26142594 |
gtaagaaattcaatcattaatcatcatttatattttcatataaaactatataaaatcaaagatgtaattttcatttaaattttgtatataggttggagaa |
26142495 |
T |
|
| Q |
216 |
tttttgcggcatttggtggattggaaaagaacaagttctcgttctcacaagttgtagagagagctaggaatctataaatgagtttagggatttgacaccg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26142494 |
tttttgcggcatttggtggattggaaaagaacaagttctcgttctcacaagttgtagagagagctaggaatctataaatgagtttagggatttgacaccg |
26142395 |
T |
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| Q |
316 |
acccaagaatctggtcaaggggtagttaaaatggcatcccttgtttgaaaataggaaaatagt |
378 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26142394 |
acccaagaatctggtcaaggggtagttaaaatggcatcccttgtttgaaaataggaaaatagt |
26142332 |
T |
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