View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14758_low_17 (Length: 391)

Name: NF14758_low_17
Description: NF14758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14758_low_17
NF14758_low_17
[»] chr3 (7 HSPs)
chr3 (24-228)||(48633523-48633730)
chr3 (276-374)||(48633778-48633876)
chr3 (276-376)||(18744771-18744871)
chr3 (115-228)||(18745315-18745428)
chr3 (139-228)||(18744634-18744723)
chr3 (176-228)||(48635824-48635876)
chr3 (137-205)||(54308465-54308533)
[»] chr6 (3 HSPs)
chr6 (125-228)||(19404300-19404403)
chr6 (124-195)||(13084857-13084928)
chr6 (321-376)||(19404822-19404877)
[»] scaffold0002 (2 HSPs)
scaffold0002 (127-228)||(97206-97307)
scaffold0002 (303-375)||(97726-97798)
[»] chr1 (2 HSPs)
chr1 (137-218)||(16450420-16450501)
chr1 (137-218)||(16459996-16460077)
[»] chr8 (4 HSPs)
chr8 (123-172)||(42663998-42664047)
chr8 (127-218)||(203436-203527)
chr8 (127-218)||(318273-318364)
chr8 (134-198)||(33321506-33321570)
[»] chr7 (1 HSPs)
chr7 (325-373)||(25904439-25904487)
[»] chr2 (2 HSPs)
chr2 (317-373)||(3204299-3204355)
chr2 (126-167)||(38138733-38138774)
[»] chr5 (1 HSPs)
chr5 (138-198)||(29595569-29595629)


Alignment Details
Target: chr3 (Bit Score: 136; Significance: 8e-71; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 24 - 228
Target Start/End: Original strand, 48633523 - 48633730
Alignment:
Q  24 caattcaatatctttaacatttttgataaattaaaccnnnnnnnnn--cttcaaaatttatgaaact--aaaataaaatcagttgtttaatatctttaaa 119  Q
    ||||||||||||||||||| |||||||||||||||||           |||||||||||||||||||  |||||| ||||||||||||||||||||||||    
T  48633523 caattcaatatctttaacagttttgataaattaaaccaaaaaaaaaaacttcaaaatttatgaaacttaaaaatagaatcagttgtttaatatctttaaa 48633622  T
Q  120 ttcaaggtgaattttaaggtgagggttcaatcaagtctctcactggtgcaccactaaatttgaccattagattaaataatcttattagtcactaccacag 219  Q
    || |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  48633623 tttaaggtgaattttaaggtgagggttcaatcaagtctctcactgatgcaccactaaatttgaccattagattaaat-atcttattagtcactaccacag 48633721  T
Q  220 tgaatctaa 228  Q
    |||||||||    
T  48633722 tgaatctaa 48633730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 276 - 374
Target Start/End: Original strand, 48633778 - 48633876
Alignment:
Q  276 catttacatgaaaccctctccatccccaacctttttaaaataaattctcattcaattttgctgtttttaattgccaataaagattaatagattaaaatt 374  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  48633778 catttacatgaaaccctctccatccccaacctttttaaaataaattctcattcaattttgctgtttttaattgccaataaagattaatagattgaaatt 48633876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 276 - 376
Target Start/End: Original strand, 18744771 - 18744871
Alignment:
Q  276 catttacatgaaaccctctccatccccaacctttttaaaataaattctcattcaattttgctgtttttaattgccaataaagattaatagattaaaattt 375  Q
    |||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  18744771 catttacatgaaactctctccatctccgacctttttaaaataaattctcattcaattttgctgtttttaattgccaataaaaattaatagattaaaattt 18744870  T
Q  376 g 376  Q
    |    
T  18744871 g 18744871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 115 - 228
Target Start/End: Complemental strand, 18745428 - 18745315
Alignment:
Q  115 ttaaattcaaggtgaattttaaggtgagggttcaatcaagtctctcactggtgcaccactaaatttgaccattagattaaataatcttattagtcactac 214  Q
    ||||||| | |||||||| || |||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  18745428 ttaaattaatggtgaattctagggtgagggttcaatcaagtccctcaccggtgcaccactgaatttgaccattagattaaataatctcattagtcactac 18745329  T
Q  215 cacagtgaatctaa 228  Q
    |||| |||||||||    
T  18745328 cacactgaatctaa 18745315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 139 - 228
Target Start/End: Original strand, 18744634 - 18744723
Alignment:
Q  139 tgagggttcaatcaagtctctcactggtgcaccactaaatttgaccattagattaaataatcttattagtcactaccacagtgaatctaa 228  Q
    |||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  18744634 tgagggtttaatcaagtccctcaccggtgcaccactaaatttgaccattagattaaataatcttgttagtcactaccacactgaatctaa 18744723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 176 - 228
Target Start/End: Complemental strand, 48635876 - 48635824
Alignment:
Q  176 aatttgaccattagattaaataatcttattagtcactaccacagtgaatctaa 228  Q
    |||||||||||||||||||||||||| ||||| |||||||||  |||||||||    
T  48635876 aatttgaccattagattaaataatctcattagacactaccacgctgaatctaa 48635824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 137 - 205
Target Start/End: Original strand, 54308465 - 54308533
Alignment:
Q  137 ggtgagggttcaatcaagtctctcactggtgcaccactaaatttgaccattagattaaataatcttatt 205  Q
    |||||||||||||| ||||| ||||| |||| |||||| | ||||||| ||||||||||||||| ||||    
T  54308465 ggtgagggttcaattaagtccctcaccggtgaaccacttattttgaccgttagattaaataatcctatt 54308533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 7e-28; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 125 - 228
Target Start/End: Original strand, 19404300 - 19404403
Alignment:
Q  125 ggtgaattttaaggtgagggttcaatcaagtctctcactggtgcaccactaaatttgaccattagattaaataatcttattagtcactaccacagtgaat 224  Q
    ||||||||||| |||||||||| ||||||||||||||||| ||||||||||||| | |||||||||||||||||| | |||||||||||||  | |||||    
T  19404300 ggtgaattttagggtgagggtttaatcaagtctctcactgatgcaccactaaatctaaccattagattaaataatttcattagtcactacccgattgaat 19404399  T
Q  225 ctaa 228  Q
    ||||    
T  19404400 ctaa 19404403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 124 - 195
Target Start/End: Complemental strand, 13084928 - 13084857
Alignment:
Q  124 aggtgaattttaaggtgagggttcaatcaagtctctcactggtgcaccactaaatttgaccattagattaaa 195  Q
    ||||||||| || |||||||||||||  ||||||||||| |||| |||||||| ||||||| ||||||||||    
T  13084928 aggtgaattctagggtgagggttcaactaagtctctcaccggtgtaccactaactttgacctttagattaaa 13084857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 321 - 376
Target Start/End: Complemental strand, 19404877 - 19404822
Alignment:
Q  321 tctcattcaattttgctgtttttaattgccaataaagattaatagattaaaatttg 376  Q
    ||||||||||||||| |||||||||||| ||||||| |||||||| ||||||||||    
T  19404877 tctcattcaattttgttgtttttaattgtcaataaaaattaataggttaaaatttg 19404822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 97206 - 97307
Alignment:
Q  127 tgaattttaaggtgagggttcaatcaagtctctcactggtgcaccactaaatttgaccattagattaaataatcttattagtcactaccacagtgaatct 226  Q
    |||||| |||||||| |||||||||||||| |||||  ||||||||||||||||||||||||||| ||| ||||| |||||||| ||||||| | |||||    
T  97206 tgaattctaaggtgatggttcaatcaagtccctcaccagtgcaccactaaatttgaccattagatcaaacaatctcattagtcattaccacacttaatct 97305  T
Q  227 aa 228  Q
    ||    
T  97306 aa 97307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 303 - 375
Target Start/End: Complemental strand, 97798 - 97726
Alignment:
Q  303 aacctttttaaaataaattctcattcaattttgctgtttttaattgccaataaagattaatagattaaaattt 375  Q
    ||||| |||||||||||||| |||||||||||| |||||||| ||||||||||| | ||||||||||||||||    
T  97798 aacctctttaaaataaattcccattcaattttgttgtttttagttgccaataaaaagtaatagattaaaattt 97726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 137 - 218
Target Start/End: Complemental strand, 16450501 - 16450420
Alignment:
Q  137 ggtgagggttcaatcaagtctctcactggtgcaccactaaatttgaccattagattaaataatcttattagtcactaccaca 218  Q
    |||||||||||||| || || |||||||||| |||||||||||| ||||||||||||| ||  || ||||||||||||||||    
T  16450501 ggtgagggttcaattaaatccctcactggtgtaccactaaatttaaccattagattaattacactcattagtcactaccaca 16450420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 137 - 218
Target Start/End: Complemental strand, 16460077 - 16459996
Alignment:
Q  137 ggtgagggttcaatcaagtctctcactggtgcaccactaaatttgaccattagattaaataatcttattagtcactaccaca 218  Q
    |||||||||||||| || || |||||||||| |||||||||||| ||||||||||||| ||  || ||||||||||||||||    
T  16460077 ggtgagggttcaattaaatccctcactggtgtaccactaaatttaaccattagattaattacactcattagtcactaccaca 16459996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 123 - 172
Target Start/End: Complemental strand, 42664047 - 42663998
Alignment:
Q  123 aaggtgaattttaaggtgagggttcaatcaagtctctcactggtgcacca 172  Q
    ||||||||||||| |||||||||||||| ||||| |||||||||| ||||    
T  42664047 aaggtgaattttagggtgagggttcaattaagtccctcactggtggacca 42663998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 127 - 218
Target Start/End: Complemental strand, 203527 - 203436
Alignment:
Q  127 tgaattttaaggtgagggttcaatcaagtctctcactggtgcaccactaaatttgaccattagattaaataatcttattagtcactaccaca 218  Q
    |||||| || |||||||||||||| || ||  |||  |||| |||||||||||| ||||||||||||| ||  || |||||| |||||||||    
T  203527 tgaattctagggtgagggttcaattaaatccttcatcggtgtaccactaaatttaaccattagattaattacactcattagttactaccaca 203436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 127 - 218
Target Start/End: Complemental strand, 318364 - 318273
Alignment:
Q  127 tgaattttaaggtgagggttcaatcaagtctctcactggtgcaccactaaatttgaccattagattaaataatcttattagtcactaccaca 218  Q
    |||||| || |||||||||||||| || ||  |||  |||| |||||||||||| ||||||||||||| ||  || |||||| |||||||||    
T  318364 tgaattctagggtgagggttcaattaaatccttcatcggtgtaccactaaatttaaccattagattaattacactcattagttactaccaca 318273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 198
Target Start/End: Original strand, 33321506 - 33321570
Alignment:
Q  134 taaggtgagggttcaatcaagtctctcactggtgcaccactaaatttgaccattagattaaataa 198  Q
    |||||||| |||||||| ||||| ||||||| || |||| |  ||||||||||| ||||||||||    
T  33321506 taaggtgatggttcaattaagtccctcactgatgtaccaatttatttgaccattggattaaataa 33321570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 325 - 373
Target Start/End: Complemental strand, 25904487 - 25904439
Alignment:
Q  325 attcaattttgctgtttttaattgccaataaagattaatagattaaaat 373  Q
    |||||||||||||| ||| || |||||||||| ||||||||||||||||    
T  25904487 attcaattttgctgctttgaaatgccaataaaaattaatagattaaaat 25904439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 373
Target Start/End: Complemental strand, 3204355 - 3204299
Alignment:
Q  317 aaattctcattcaattttgctgtttttaattgccaataaagattaatagattaaaat 373  Q
    |||||||||||||||||||||||||| || |||| ||| | ||||||||||| ||||    
T  3204355 aaattctcattcaattttgctgttttgaaatgccgatacaaattaatagattcaaat 3204299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 167
Target Start/End: Complemental strand, 38138774 - 38138733
Alignment:
Q  126 gtgaattttaaggtgagggttcaatcaagtctctcactggtg 167  Q
    |||||||||||||||||| |||||| ||||| ||||||||||    
T  38138774 gtgaattttaaggtgaggattcaattaagtccctcactggtg 38138733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 198
Target Start/End: Complemental strand, 29595629 - 29595569
Alignment:
Q  138 gtgagggttcaatcaagtctctcactggtgcaccactaaatttgaccattagattaaataa 198  Q
    ||||||||||||| ||||| |||||  ||| |||| |  ||||||||||||||||||||||    
T  29595629 gtgagggttcaattaagtccctcaccagtgtaccagtttatttgaccattagattaaataa 29595569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University