View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14758_low_2 (Length: 618)
Name: NF14758_low_2
Description: NF14758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14758_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 546; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 21 - 607
Target Start/End: Original strand, 13890625 - 13891217
Alignment:
| Q |
21 |
cctggcacgttctctccgaccccggaaaacgcgctgtttatgaccgcggtggtggtgtaaccgccacc------gcggcgttttggactgcgtgtcctta |
114 |
Q |
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| T |
13890625 |
cctggcacgttctctccgaccccggaaaacgcactgtttatgaccgtggtggtggtgtaaccgccgccaccactgcggcgttttggactgcgtgtcctta |
13890724 |
T |
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| Q |
115 |
ttgttggaatttgtatcagtatgagaaaaaatacgaagattgttctttgatgtgtcaaacttgtatgaaaacttttcacggtgtggcggtgaagtcaccg |
214 |
Q |
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| T |
13890725 |
ttgttggaatttgtatcagtatgagaaaaaatacgaagattgttctttgatgtgtcaaacttgtatgaaaacttttcacggtgtggcggtgaagtcaccg |
13890824 |
T |
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| Q |
215 |
gtgaaagttggtgtaaccgtcgtagaaggggaggagaagaggcagtattataagtgtaaggcaagagtgccgttgaagttttacgaagtgaaaaacggtg |
314 |
Q |
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| T |
13890825 |
gtgaaagttggtgcaaccgtcgtagaaggggaggagaagaggcagtattataagtgtaaggcaagagtgccgttgaagttttacgaagtgaaaaacggtg |
13890924 |
T |
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| Q |
315 |
atgagagcttaatgggtgagaatgaagctgaatttgtttatgtttctgatgatgatggtgattgggagaaagaatgggggaatgtgggtgatgctggtgt |
414 |
Q |
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| T |
13890925 |
atgagagcttaatgggtgaaaatgaagctgaatttgtttatgtttctgatgatgatggtgattgggagaaagaatgggggaatgtgggtgatgctggtgt |
13891024 |
T |
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| Q |
415 |
gagaaatgaaggttttgagaaggtgaatcaaacagtggaaacagcgcaaggaaacgataaacgaaagatgagggttaagactgtggcaaggaagagtgtt |
514 |
Q |
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| T |
13891025 |
gagaaatgaaggttttgagaaggtgaatcaaacagtggaaacagcgcaaggaaacgataaacgaaagatgagggttaagactgtggcaaggaagagtgtt |
13891124 |
T |
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| Q |
515 |
gtgaacagaatgacaagatttgattttggtaatgatttgggtttggatggaaaggattgtgaattggagtttactgaaggtgctgatgatgtc |
607 |
Q |
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| T |
13891125 |
gtgaacagaataacaagatttgattttggtaatgatttgggtttggatggaaaggattgtgaattggagtttactgaaggtgctgatgatgtc |
13891217 |
T |
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