View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14758_low_21 (Length: 369)
Name: NF14758_low_21
Description: NF14758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14758_low_21 |
 | |
|
| [»] scaffold0889 (1 HSPs) |
| | |
|
| [»] scaffold0870 (1 HSPs) |
| | |
|
| [»] scaffold1033 (2 HSPs) |
| | |
|
| [»] scaffold1029 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 14 - 355
Target Start/End: Complemental strand, 28586842 - 28586499
Alignment:
| Q |
14 |
aatattataattaaataaattaatgtgttacaatatgcatatgctgcatacatattttgaccttcaaccagccagtagctcaacaaaagaaatat--gaa |
111 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||| |
|
|
| T |
28586842 |
aatattataattaaataaatttatgtgttacaatatgcatatgctgcatacatattttgaccttcaatcagccagtagctcaacaaaagacatatatgaa |
28586743 |
T |
|
| Q |
112 |
ccatatgcaatgcattgttaagctataaatagctcaacataacattcccatttcttcaaaacaatcatcttccttaagttattgtctctgtatacagcta |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28586742 |
ccatatgcaatgcattgttaagctataaatagctcagcatatcattcccatttcttcaaaacaatcatcttccttaagttattgtctctgtatacagcta |
28586643 |
T |
|
| Q |
212 |
tagcaaaccacttcacatcttcacaatatttccagttataaacactgaatcaagtctgttttacaatcaaagcattaatttcaagaatggtaattaattt |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||| |
|
|
| T |
28586642 |
tagcaaaccacttcacatcttcacaatatttccagttataaacactgaatcaagtctgttttactatcaaagcattaatttccagaatggtaagtaattt |
28586543 |
T |
|
| Q |
312 |
aattggagtacagttgtatcaaagaaatgtatttttatttcaat |
355 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28586542 |
aattggagtacagttgtatcaaagaaatgtatttttatttcaat |
28586499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 129 - 323
Target Start/End: Complemental strand, 26316585 - 26316391
Alignment:
| Q |
129 |
ttaagctataaatagctcaacataacattcccatttcttcaaaacaatcatcttccttaagttattgtctctgtatacagctatagcaaaccacttcaca |
228 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
26316585 |
ttaagctataaatagctcaacatatcattcccatttctccaaaataatcatcttccttgagttattttctctgtatactgctatagcaaaccacttcaca |
26316486 |
T |
|
| Q |
229 |
tcttcacaatatttccagttataaacactgaatcaagtctgttttacaatcaaagcattaatttcaagaatggtaattaatttaattggagtaca |
323 |
Q |
| |
|
|||| ||||||| || |||||||||||||||||| |||||||| |||||| ||||||||| |||||||||| || |||||||| |||||| |
|
|
| T |
26316485 |
tcttaacaatatcctcaaccataaacactgaatcaagtttgttttactatcaaatcattaatttatagaatggtaagtattttaattgaagtaca |
26316391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 14 - 182
Target Start/End: Complemental strand, 28575588 - 28575427
Alignment:
| Q |
14 |
aatattataattaaataaattaatgtgttacaatatgcatatgctgcatacatattttgaccttcaaccagccagtagctcaacaaaagaaatatgaacc |
113 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||| |||||||||||| || |||||||||| | |||||||||||| | | ||||||||| | |
|
|
| T |
28575588 |
aatattataactaaataaattaatgtgttacaat--gcacatgctgcatacacatgctgaccttcaatctaccagtagctcaaaagagcaaatatgaaac |
28575491 |
T |
|
| Q |
114 |
atatgcaatgcattgttaagctataaatagctcaacataacattcccatttcttcaaaacaatcatctt |
182 |
Q |
| |
|
||||||| |||| ||||||||||||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
28575490 |
gagtgcaatg-----ttaaactataaatagctcaacatatcattcccatttcttcaaaataatcatctt |
28575427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 223 - 323
Target Start/End: Complemental strand, 28580487 - 28580387
Alignment:
| Q |
223 |
ttcacatcttcacaatatttccagttataaacactgaatcaagtctgttttacaatcaaagcattaatttcaagaatggtaattaatttaattggagtac |
322 |
Q |
| |
|
|||||||||| ||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| || |||||||| ||||| |
|
|
| T |
28580487 |
ttcacatcttaacaatatccccagctataaacactgaatcaagtctgttttattatcaaagcattaatttccagaatggtaagtattttaattgaagtac |
28580388 |
T |
|
| Q |
323 |
a |
323 |
Q |
| |
|
| |
|
|
| T |
28580387 |
a |
28580387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 14 - 186
Target Start/End: Complemental strand, 28580676 - 28580512
Alignment:
| Q |
14 |
aatattataattaaataaattaatgtgttacaatatgcatatgctgcatacatattttgaccttcaaccagccagtagctcaacaaaagaaatatgaacc |
113 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||| |||| ||||||||||| ||||||||||| | |||||||||| | || ||||||||||| |
|
|
| T |
28580676 |
aatattataactgaataaattaatgtgttacaatgcacata---tgcatacatatgttgaccttcaatatacaagtagctcaaaagaacaaatatgaacc |
28580580 |
T |
|
| Q |
114 |
atatgcaatgcattgttaagctataaatagctcaacataacattcccatttcttcaaaacaatcatcttcctt |
186 |
Q |
| |
|
| || || ||||| |||||||||||||| |||| ||||||||||||||||||| || |||||||||| |
|
|
| T |
28580579 |
gtgtgaaa-----tgttatgctataaatagctctacatgtcattcccatttcttcaaaataaccatcttcctt |
28580512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 243 - 323
Target Start/End: Complemental strand, 28575418 - 28575338
Alignment:
| Q |
243 |
ccagttataaacactgaatcaagtctgttttacaatcaaagcattaatttcaagaatggtaattaatttaattggagtaca |
323 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||| || ||||| || |||||| |
|
|
| T |
28575418 |
ccagctataaacaccgaatcaagtctgttttattatcaaagcattaatttctagaatggtaagtattttaactgaagtaca |
28575338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 96
Target Start/End: Complemental strand, 28568834 - 28568765
Alignment:
| Q |
27 |
aataaattaatgtgttacaatatgcatatgctgcatacatattttgaccttcaaccagccagtagctcaa |
96 |
Q |
| |
|
||||||||||||| |||||||| ||||||| |||||||||| |||||||||| || ||||||||||| |
|
|
| T |
28568834 |
aataaattaatgtcttacaatacacatatgcagcatacatatgctgaccttcaatcattcagtagctcaa |
28568765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 271 - 322
Target Start/End: Complemental strand, 28568554 - 28568503
Alignment:
| Q |
271 |
tttacaatcaaagcattaatttcaagaatggtaattaatttaattggagtac |
322 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||| || |||||||| ||||| |
|
|
| T |
28568554 |
tttactatcaaagcattaatttctagaatggtaagtattttaattgaagtac |
28568503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 145 - 302
Target Start/End: Original strand, 34812832 - 34812992
Alignment:
| Q |
145 |
tcaacataacattcccatttcttcaaaacaatcatcttccttaagttattgtctctgtataca---gctatagcaaaccacttcacatcttcacaatatt |
241 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||| | ||||| |
|
|
| T |
34812832 |
tcaacatatcattcccatttcttcaaaataatcatcttccttgagttattgtctctgtatactactgctatagcaaactacttcacatcttaaaaatatc |
34812931 |
T |
|
| Q |
242 |
tccagttataaacactgaatcaagtctgttttacaatcaaagcattaatttcaagaatggt |
302 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
34812932 |
tccacctataaacaccgaatcaagtctgttttattatcaaagcattaattttcagaatggt |
34812992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 8e-40; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 136 - 302
Target Start/End: Complemental strand, 5893041 - 5892872
Alignment:
| Q |
136 |
ataaatagctcaacataacattcccatttcttcaaaacaatcatcttccttaagttattgtctctgta---tacagctatagcaaaccacttcacatctt |
232 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||| ||| |||||||||||| |||||||||||| |
|
|
| T |
5893041 |
ataaatagctccacatatcattcccatttcttcaaaataatcatcttccttgagttattgtctctgtatactactgctatagcaaactacttcacatctt |
5892942 |
T |
|
| Q |
233 |
cacaatatttccagttataaacactgaatcaagtctgttttacaatcaaagcattaatttcaagaatggt |
302 |
Q |
| |
|
| |||||||||| ||||||||| |||||||||||||||| |||| |||| |||||| |||||||| |
|
|
| T |
5892941 |
aaaaatatttccacctataaacaccaaatcaagtctgttttattatcagagcactaattttcagaatggt |
5892872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0889 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0889
Description:
Target: scaffold0889; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 14 - 193
Target Start/End: Original strand, 4148 - 4319
Alignment:
| Q |
14 |
aatattataattaaataaattaatgtgttacaatatgcatatgctgcatacatattttgaccttcaaccagccagtagctcaacaaaagaaatatgaacc |
113 |
Q |
| |
|
|||||||||| ||| |||||||||||||| |||| ||| ||||||||||||||||||||||||||| || ||||||||||| | | ||||||||||| |
|
|
| T |
4148 |
aatattataactaa-taaattaatgtgttccaat--gcacatgctgcatacatattttgaccttcaatcattcagtagctcaaaagagcaaatatgaacc |
4244 |
T |
|
| Q |
114 |
atatgcaatgcattgttaagctataaatagctcaacataacattcccatttcttcaaaacaatcatcttccttaagttat |
193 |
Q |
| |
|
|| ||||||| |||| ||||||||||||| ||||| |||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
4245 |
atgtgcaatg-----ttaaactataaatagctccacatattattcccatttcttcaaaataatcatcttccttgagttat |
4319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0870 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0870
Description:
Target: scaffold0870; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 14 - 193
Target Start/End: Original strand, 4352 - 4523
Alignment:
| Q |
14 |
aatattataattaaataaattaatgtgttacaatatgcatatgctgcatacatattttgaccttcaaccagccagtagctcaacaaaagaaatatgaacc |
113 |
Q |
| |
|
|||||||||| ||| |||||||||||||| |||| ||| ||||||||||||||||||||||||||| || ||||||||||| | | ||||||||||| |
|
|
| T |
4352 |
aatattataactaa-taaattaatgtgttccaat--gcacatgctgcatacatattttgaccttcaatcattcagtagctcaaaagagcaaatatgaacc |
4448 |
T |
|
| Q |
114 |
atatgcaatgcattgttaagctataaatagctcaacataacattcccatttcttcaaaacaatcatcttccttaagttat |
193 |
Q |
| |
|
|| ||||||| |||| ||||||||||||| ||||| |||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
4449 |
atgtgcaatg-----ttaaactataaatagctccacatattattcccatttcttcaaaataatcatcttccttgagttat |
4523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 210 - 314
Target Start/End: Complemental strand, 24072120 - 24072016
Alignment:
| Q |
210 |
tatagcaaaccacttcacatcttcacaatatttccagttataaacactgaatcaagtctgttttacaatcaaagcattaatttcaagaatggtaattaat |
309 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||| |||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||| || | |
|
|
| T |
24072120 |
tatagcaaaccacttcacatcttaacaatatctccaactataaacattgaatcaagtctgttttactatcaaagcattaatttccagaatggtaagtatt |
24072021 |
T |
|
| Q |
310 |
ttaat |
314 |
Q |
| |
|
||||| |
|
|
| T |
24072020 |
ttaat |
24072016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1033 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold1033
Description:
Target: scaffold1033; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 27 - 183
Target Start/End: Original strand, 2872 - 3023
Alignment:
| Q |
27 |
aataaattaatgtgttacaatatgcatatgctgcatacatattttgaccttcaaccagccagtagctcaacaaaagaaatatgaaccatatgcaatgcat |
126 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||||||| ||||||||||| || ||||| | ||| | || ||||| || | | ||||||| |
|
|
| T |
2872 |
aataaattaatgtgttacaatacacatatgcagcatacatatgttgaccttcaatcattcagtaacccaaaataacaaataaaaatcgtgtgcaatg--- |
2968 |
T |
|
| Q |
127 |
tgttaagctataaatagctcaacataacattcccatttcttcaaaacaatcatcttc |
183 |
Q |
| |
|
|||| ||||||||||||| ||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
2969 |
--ttaaactataaatagctccacatatcattcccatttcttcaaaataatcatcttc |
3023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1033; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 222 - 323
Target Start/End: Original strand, 3020 - 3126
Alignment:
| Q |
222 |
cttcacatcttcacaatatttccagttataaacactgaatcaagtctgtttta-----caatcaaagcattaatttcaagaatggtaattaatttaattg |
316 |
Q |
| |
|
||||||||||| ||||||| |||| ||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||| || |||||||| |
|
|
| T |
3020 |
cttcacatcttaacaatatccccagctataaacactgaatcaagtctgttttaatttactatcaaagcattaatttccagaatggtaagtattttaattg |
3119 |
T |
|
| Q |
317 |
gagtaca |
323 |
Q |
| |
|
|||||| |
|
|
| T |
3120 |
aagtaca |
3126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1029 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold1029
Description:
Target: scaffold1029; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 27 - 183
Target Start/End: Original strand, 2872 - 3023
Alignment:
| Q |
27 |
aataaattaatgtgttacaatatgcatatgctgcatacatattttgaccttcaaccagccagtagctcaacaaaagaaatatgaaccatatgcaatgcat |
126 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||||||| ||||||||||| || ||||| | ||| | || ||||| || | | ||||||| |
|
|
| T |
2872 |
aataaattaatgtgttacaatacacatatgcagcatacatatgttgaccttcaatcattcagtaacccaaaataacaaataaaaatcgtgtgcaatg--- |
2968 |
T |
|
| Q |
127 |
tgttaagctataaatagctcaacataacattcccatttcttcaaaacaatcatcttc |
183 |
Q |
| |
|
|||| ||||||||||||| ||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
2969 |
--ttaaactataaatagctccacatatcattcccatttcttcaaaataatcatcttc |
3023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1029; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 222 - 323
Target Start/End: Original strand, 3020 - 3126
Alignment:
| Q |
222 |
cttcacatcttcacaatatttccagttataaacactgaatcaagtctgtttta-----caatcaaagcattaatttcaagaatggtaattaatttaattg |
316 |
Q |
| |
|
||||||||||| ||||||| |||| ||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||| || |||||||| |
|
|
| T |
3020 |
cttcacatcttaacaatatccccagctataaacactgaatcaagtctgttttaatttactatcaaagcattaatttccagaatggtaagtattttaattg |
3119 |
T |
|
| Q |
317 |
gagtaca |
323 |
Q |
| |
|
|||||| |
|
|
| T |
3120 |
aagtaca |
3126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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