View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14758_low_24 (Length: 358)

Name: NF14758_low_24
Description: NF14758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14758_low_24
NF14758_low_24
[»] chr2 (8 HSPs)
chr2 (124-339)||(24769943-24770158)
chr2 (48-105)||(15391728-15391785)
chr2 (68-124)||(15917258-15917314)
chr2 (68-124)||(11000429-11000485)
chr2 (75-123)||(17765442-17765490)
chr2 (50-124)||(44022949-44023023)
chr2 (68-124)||(33516263-33516319)
chr2 (68-124)||(40176275-40176331)
[»] scaffold0437 (1 HSPs)
scaffold0437 (142-337)||(1058-1253)
[»] chr3 (8 HSPs)
chr3 (25-124)||(50651827-50651926)
chr3 (34-124)||(963642-963732)
chr3 (34-124)||(3140423-3140513)
chr3 (43-124)||(16178528-16178609)
chr3 (48-124)||(15312167-15312243)
chr3 (50-124)||(48570518-48570592)
chr3 (68-124)||(11310678-11310734)
chr3 (75-119)||(26771470-26771514)
[»] chr4 (10 HSPs)
chr4 (25-124)||(36223568-36223667)
chr4 (34-124)||(46145246-46145336)
chr4 (43-124)||(19740519-19740600)
chr4 (50-124)||(48311677-48311751)
chr4 (43-124)||(5790567-5790648)
chr4 (68-124)||(55726072-55726128)
chr4 (261-335)||(22284258-22284332)
chr4 (50-124)||(54483638-54483712)
chr4 (50-123)||(23163111-23163184)
chr4 (46-114)||(20788769-20788837)
[»] chr1 (5 HSPs)
chr1 (25-124)||(2490774-2490873)
chr1 (46-123)||(6478102-6478179)
chr1 (34-108)||(52255089-52255159)
chr1 (50-124)||(37297978-37298052)
chr1 (50-124)||(51994205-51994279)
[»] chr6 (6 HSPs)
chr6 (34-124)||(13937271-13937361)
chr6 (50-124)||(11462002-11462076)
chr6 (46-123)||(15959294-15959371)
chr6 (46-115)||(18651722-18651791)
chr6 (75-123)||(14373471-14373519)
chr6 (75-123)||(32536507-32536555)
[»] chr5 (5 HSPs)
chr5 (44-124)||(33169239-33169319)
chr5 (34-124)||(8941887-8941977)
chr5 (46-124)||(32228387-32228465)
chr5 (47-121)||(24407537-24407611)
chr5 (48-124)||(26072478-26072554)
[»] chr8 (8 HSPs)
chr8 (208-338)||(23111973-23112103)
chr8 (48-124)||(12257930-12258006)
chr8 (48-124)||(12265322-12265398)
chr8 (75-123)||(34137443-34137491)
chr8 (68-125)||(28415749-28415806)
chr8 (68-124)||(2529491-2529547)
chr8 (68-116)||(9922206-9922254)
chr8 (68-124)||(13199728-13199784)
[»] chr7 (9 HSPs)
chr7 (46-124)||(48394487-48394565)
chr7 (187-243)||(34244422-34244478)
chr7 (50-124)||(37254345-37254419)
chr7 (173-236)||(33606262-33606325)
chr7 (50-124)||(25619046-25619120)
chr7 (50-124)||(41698618-41698692)
chr7 (34-87)||(32703527-32703580)
chr7 (68-116)||(17720249-17720297)
chr7 (68-120)||(29967580-29967632)
[»] scaffold0161 (1 HSPs)
scaffold0161 (77-124)||(6488-6535)


Alignment Details
Target: chr2 (Bit Score: 184; Significance: 2e-99; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 124 - 339
Target Start/End: Complemental strand, 24770158 - 24769943
Alignment:
Q  124 ctcaaattcacaacttgtcctgaacaatcagcatatcttgtaaataaccctttcaaagcttcgaaactagacatcttacctttgcaaaacaccattaaat 223  Q
    |||||||||| | ||||||||||||||||||||||||||||||||| | | ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  24770158 ctcaaattcatagcttgtcctgaacaatcagcatatcttgtaaatatctccttcaaagcttccaaactagacatcttacctttgcaaaacaccattaaat 24770059  T
Q  224 catcagcatagaaacaatgggaaggaatattggcttttctagaagctttgattaattcaactttcccatcatccacaagtttcttgatacctctactaag 323  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  24770058 catcaacatagaaacaatgggaaggaatattggcttttctagaagctttgattaattcaactttcccatcatccacaagttgcttgatacctctactaag 24769959  T
Q  324 aacttcctcagctaaa 339  Q
    ||||||||||||||||    
T  24769958 aacttcctcagctaaa 24769943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 105
Target Start/End: Original strand, 15391728 - 15391785
Alignment:
Q  48 agtcgatacccatacaaatgagcgggttcgaccaccaattgtgaataccaaaactaaa 105  Q
    |||||||||||||||| | ||||||||||||||||||||| ||| |||| ||||||||    
T  15391728 agtcgatacccatacataagagcgggttcgaccaccaattatgagtaccgaaactaaa 15391785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 68 - 124
Target Start/End: Original strand, 15917258 - 15917314
Alignment:
Q  68 agcgggttcgaccaccaattgtgaataccaaaactaaaaactacattactagctttc 124  Q
    |||||| ||||||||||||| ||| ||||||||||||| || |||||||||||||||    
T  15917258 agcgggctcgaccaccaattatgagtaccaaaactaaagacaacattactagctttc 15917314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 124
Target Start/End: Complemental strand, 11000485 - 11000429
Alignment:
Q  68 agcgggttcgaccaccaattgtgaataccaaaactaaaaactacattactagctttc 124  Q
    |||||| ||||||||||| |||||||||||||| |||| ||||  ||||||||||||    
T  11000485 agcgggctcgaccaccaactgtgaataccaaaaataaagactatgttactagctttc 11000429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 123
Target Start/End: Complemental strand, 17765490 - 17765442
Alignment:
Q  75 tcgaccaccaattgtgaataccaaaactaaaaactacattactagcttt 123  Q
    ||||||||||| | ||| |||||||||||||||| ||||||||||||||    
T  17765490 tcgaccaccaactatgagtaccaaaactaaaaacaacattactagcttt 17765442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 124
Target Start/End: Original strand, 44022949 - 44023023
Alignment:
Q  50 tcgatacccatacaaatgagcgggttcgaccaccaattgtgaataccaaaactaaaaactacattactagctttc 124  Q
    ||||| ||||||||||  |||||| || || ||||||| ||| |||||||| |||| || |||||||||||||||    
T  44022949 tcgatgcccatacaaacaagcgggctcaactaccaattatgagtaccaaaagtaaagaccacattactagctttc 44023023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 124
Target Start/End: Complemental strand, 33516319 - 33516263
Alignment:
Q  68 agcgggttcgaccaccaattgtgaataccaaaactaaaaactacattactagctttc 124  Q
    |||||| ||||||||||||| ||| |||||||| |||| || || ||||||||||||    
T  33516319 agcgggctcgaccaccaattatgagtaccaaaagtaaagaccacgttactagctttc 33516263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 124
Target Start/End: Original strand, 40176275 - 40176331
Alignment:
Q  68 agcgggttcgaccaccaattgtgaataccaaaactaaaaactacattactagctttc 124  Q
    |||||| ||||||||||||| ||| | |||||| |||| || |||||||||||||||    
T  40176275 agcgggctcgaccaccaattatgagttccaaaagtaaagaccacattactagctttc 40176331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0437 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: scaffold0437
Description:

Target: scaffold0437; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 142 - 337
Target Start/End: Original strand, 1058 - 1253
Alignment:
Q  142 cctgaacaatcagcatatcttgtaaataaccctttcaaagcttcgaaactagacatcttacctttgcaaaacaccattaaatcatcagcatagaaacaat 241  Q
    ||||||||||| |||||||| || |||||   ||| |||||||| |||||||||||||| ||||||||||| |||||||| ||||||||||| |||||||    
T  1058 cctgaacaatctgcatatctagtgaataattgttttaaagcttccaaactagacatctttcctttgcaaaaaaccattaagtcatcagcataaaaacaat 1157  T
Q  242 gggaaggaatattggcttttctagaagctttgattaattcaactttcccatcatccacaagtttcttgatacctctactaagaacttcctcagcta 337  Q
    | || |||||||  || ||||||||||| |||||||| ||||| || |||||||||||||| ||||| || |||||||||||||||||||||||||    
T  1158 gtgagggaatatatgcatttctagaagccttgattaaatcaacctttccatcatccacaagcttctttatgcctctactaagaacttcctcagcta 1253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 25 - 124
Target Start/End: Complemental strand, 50651926 - 50651827
Alignment:
Q  25 gtagtaaaagatataaggcagttagtcgatacccatacaaatgagcgggttcgaccaccaattgtgaataccaaaactaaaaactacattactagctttc 124  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50651926 gtagtcaaagatacaaggcagttagtcgatacccatacaaatgagcgggttcgaccaccaattgtgaataccaaaactaaaaactacattactagctttc 50651827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 34 - 124
Target Start/End: Complemental strand, 963732 - 963642
Alignment:
Q  34 gatataaggcagttagtcgatacccatacaaatgagcgggttcgaccaccaattgtgaataccaaaactaaaaactacattactagctttc 124  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  963732 gatacaagacagttagtcgatacccatacaaatgagcgggttcgaccaccaattatgaataccaaaactaaaaactacattactagctttc 963642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 34 - 124
Target Start/End: Original strand, 3140423 - 3140513
Alignment:
Q  34 gatataaggcagttagtcgatacccatacaaatgagcgggttcgaccaccaattgtgaataccaaaactaaaaactacattactagctttc 124  Q
    |||| ||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  3140423 gatacaagacagttagtcgatacccatacatatgagcgggttcgaccaccaattatgaataccaaaactaaaaactacattactagctttc 3140513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 124
Target Start/End: Original strand, 16178528 - 16178609
Alignment:
Q  43 cagttagtcgatacccatacaaatgagcgggttcgaccaccaattgtgaataccaaaactaaaaactacattactagctttc 124  Q
    |||| ||||||| || ||||| | ||||||||| ||||||||| | |||||||| || |||||||| |||||||||||||||    
T  16178528 cagtcagtcgatgcctatacataagagcgggttagaccaccaactatgaataccgaagctaaaaacaacattactagctttc 16178609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 48 - 124
Target Start/End: Original strand, 15312167 - 15312243
Alignment:
Q  48 agtcgatacccatacaaatgagcgggttcgaccaccaattgtgaataccaaaactaaaaactacattactagctttc 124  Q
    |||||||||||||||| | ||| |||||||||||||||   ||| |||| |||||||| || |||||||||||||||    
T  15312167 agtcgatacccatacataagagtgggttcgaccaccaaagatgagtaccgaaactaaatacaacattactagctttc 15312243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 124
Target Start/End: Complemental strand, 48570592 - 48570518
Alignment:
Q  50 tcgatacccatacaaatgagcgggttcgaccaccaattgtgaataccaaaactaaaaactacattactagctttc 124  Q
    ||||| |||||||| |  |||||| ||||||||||||| ||| |||||||| |||| || |||||| ||||||||    
T  48570592 tcgatgcccatacatacaagcgggctcgaccaccaattatgagtaccaaaaataaagaccacattattagctttc 48570518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 124
Target Start/End: Complemental strand, 11310734 - 11310678
Alignment:
Q  68 agcgggttcgaccaccaattgtgaataccaaaactaaaaactacattactagctttc 124  Q
    |||||||||||||||||||| ||  |||||||| |||| || ||||| |||||||||    
T  11310734 agcgggttcgaccaccaattatgtgtaccaaaattaaagaccacattgctagctttc 11310678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 119
Target Start/End: Complemental strand, 26771514 - 26771470
Alignment:
Q  75 tcgaccaccaattgtgaataccaaaactaaaaactacattactag 119  Q
    ||||||||||||| ||| || ||||||||||||| ||||||||||    
T  26771514 tcgaccaccaattatgagtatcaaaactaaaaacaacattactag 26771470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 7e-40; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 25 - 124
Target Start/End: Complemental strand, 36223667 - 36223568
Alignment:
Q  25 gtagtaaaagatataaggcagttagtcgatacccatacaaatgagcgggttcgaccaccaattgtgaataccaaaactaaaaactacattactagctttc 124  Q
    ||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  36223667 gtagtcaatgatacaaggcagttagtcgatacccatacaaatgagcgggttcgaccaccagttgtgaataccaaaactaaaaactacattactagctttc 36223568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 34 - 124
Target Start/End: Original strand, 46145246 - 46145336
Alignment:
Q  34 gatataaggcagttagtcgatacccatacaaatgagcgggttcgaccaccaattgtgaataccaaaactaaaaactacattactagctttc 124  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  46145246 gatacaagacagttagtcgatacccatacaaatgagcgggttcgaccaccaattatgaataccaaaactaaaaactacattactaactttc 46145336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 43 - 124
Target Start/End: Complemental strand, 19740600 - 19740519
Alignment:
Q  43 cagttagtcgatacccatacaaatgagcgggttcgaccaccaattgtgaataccaaaactaaaaactacattactagctttc 124  Q
    ||||| |||||||| |||||| |||||||||||| |||||||||| ||| |||||||| ||||||| |||||||||||||||    
T  19740600 cagttcgtcgatactcatacatatgagcgggttcaaccaccaattatgagtaccaaaagtaaaaacaacattactagctttc 19740519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 50 - 124
Target Start/End: Original strand, 48311677 - 48311751
Alignment:
Q  50 tcgatacccatacaaatgagcgggttcgaccaccaattgtgaataccaaaactaaaaactacattactagctttc 124  Q
    |||||||||||||| |  |||||| ||||||||||||| ||| |||||||| |||| || |||||||||||||||    
T  48311677 tcgatacccatacatacaagcgggctcgaccaccaattatgagtaccaaaagtaaagaccacattactagctttc 48311751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 124
Target Start/End: Complemental strand, 5790648 - 5790567
Alignment:
Q  43 cagttagtcgatacccatacaaatgagcgggttcgaccaccaattgtgaataccaaaactaaaaactacattactagctttc 124  Q
    |||| ||| ||| |||||||| | ||||||||||||||||||| | |||||||| || ||||| || |||||||||||||||    
T  5790648 cagtcagttgatgcccatacataagagcgggttcgaccaccaactatgaataccgaagctaaacacaacattactagctttc 5790567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 124
Target Start/End: Complemental strand, 55726128 - 55726072
Alignment:
Q  68 agcgggttcgaccaccaattgtgaataccaaaactaaaaactacattactagctttc 124  Q
    |||||| ||||||||||||| || ||||||||| |||| || |||||||||||||||    
T  55726128 agcgggctcgaccaccaattatgtataccaaaattaaagaccacattactagctttc 55726072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 335
Target Start/End: Original strand, 22284258 - 22284332
Alignment:
Q  261 tctagaagctttgattaattcaactttcccatcatccacaagtttcttgatacctctactaagaacttcctcagc 335  Q
    |||||||||||| ||||| |||||||| ||||||| ||| | ||| || || |||||||| || |||||||||||    
T  22284258 tctagaagctttaattaaatcaactttgccatcattcaccaatttattaattcctctacttagcacttcctcagc 22284332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 124
Target Start/End: Complemental strand, 54483712 - 54483638
Alignment:
Q  50 tcgatacccatacaaatgagcgggttcgaccaccaattgtgaataccaaaactaaaaactacattactagctttc 124  Q
    ||||| |||||||| |  |||||| ||||||||||||| ||| |||||||  |||| || |||||||||||||||    
T  54483712 tcgatgcccatacatacaagcggggtcgaccaccaattatgagtaccaaatgtaaagaccacattactagctttc 54483638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 123
Target Start/End: Complemental strand, 23163184 - 23163111
Alignment:
Q  50 tcgatacccatacaaatgagcgggttcgaccaccaattgtgaataccaaaactaaaaactacattactagcttt 123  Q
    ||||| ||||||||||  |  ||| ||||||||||||| ||| ||||| | |||||||| ||||||||||||||    
T  23163184 tcgatgcccatacaaaccaaagggctcgaccaccaattatgagtaccatagctaaaaacaacattactagcttt 23163111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 114
Target Start/End: Complemental strand, 20788837 - 20788769
Alignment:
Q  46 ttagtcgatacccatacaaatgagcgggttcgaccaccaattgtgaataccaaaactaaaaactacatt 114  Q
    |||||| ||||||| ||| |  |||||||||||||||||||| ||| ||||||| ||||| || |||||    
T  20788837 ttagtcaatacccaaacataacagcgggttcgaccaccaattctgagtaccaaagctaaacacaacatt 20788769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 7e-40; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 25 - 124
Target Start/End: Original strand, 2490774 - 2490873
Alignment:
Q  25 gtagtaaaagatataaggcagttagtcgatacccatacaaatgagcgggttcgaccaccaattgtgaataccaaaactaaaaactacattactagctttc 124  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  2490774 gtagtcaaagatacaaggcagttagtcgatacccatacaaatgagcgggttcgaccaccaattgtgaataccaaaacgaaaaactacattactaactttc 2490873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 46 - 123
Target Start/End: Original strand, 6478102 - 6478179
Alignment:
Q  46 ttagtcgatacccatacaaatgagcgggttcgaccaccaattgtgaataccaaaactaaaaactacattactagcttt 123  Q
    ||||||||||||||||||| ||| ||| |||||||||||||| ||| || ||||||||||||| |||||| |||||||    
T  6478102 ttagtcgatacccatacaattgaacggattcgaccaccaattatgagtatcaaaactaaaaacaacattattagcttt 6478179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 108
Target Start/End: Original strand, 52255089 - 52255159
Alignment:
Q  34 gatataaggcagttagtcgatacccatacaaatgagcgggttcgaccaccaattgtgaataccaaaactaaaaac 108  Q
    |||| ||| ||||||||||||||||||||||||||||| |||    |||||||| | ||||||||||||||||||    
T  52255089 gatacaagacagttagtcgatacccatacaaatgagcgagtt----caccaattataaataccaaaactaaaaac 52255159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 124
Target Start/End: Complemental strand, 37298052 - 37297978
Alignment:
Q  50 tcgatacccatacaaatgagcgggttcgaccaccaattgtgaataccaaaactaaaaactacattactagctttc 124  Q
    ||||||| |||||| |  |||||| ||||||||||||| ||  |||||||| |||| ||||||||||||||||||    
T  37298052 tcgatactcatacataaaagcgggctcgaccaccaattatgtgtaccaaaattaaagactacattactagctttc 37297978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 124
Target Start/End: Complemental strand, 51994279 - 51994205
Alignment:
Q  50 tcgatacccatacaaatgagcgggttcgaccaccaattgtgaataccaaaactaaaaactacattactagctttc 124  Q
    ||||| |||||||| |  |||||| ||||||||||||| ||| |||||||| |||| |  |||||||||||||||    
T  51994279 tcgatgcccatacatacaagcgggctcgaccaccaattatgagtaccaaaagtaaagatcacattactagctttc 51994205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 7e-37; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 34 - 124
Target Start/End: Original strand, 13937271 - 13937361
Alignment:
Q  34 gatataaggcagttagtcgatacccatacaaatgagcgggttcgaccaccaattgtgaataccaaaactaaaaactacattactagctttc 124  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  13937271 gatacaagacagttagtcgatacccatacaaatgagcgggttcgaccaccaattatgaataccaaaactaaaaactacattactagctttc 13937361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 50 - 124
Target Start/End: Original strand, 11462002 - 11462076
Alignment:
Q  50 tcgatacccatacaaatgagcgggttcgaccaccaattgtgaataccaaaactaaaaactacattactagctttc 124  Q
    |||||||||||||| |  |||||| ||||||||||||| ||  |||||||| |||| ||||||||||||||||||    
T  11462002 tcgatacccatacataaaagcgggctcgaccaccaattatgtgtaccaaaattaaagactacattactagctttc 11462076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 123
Target Start/End: Complemental strand, 15959371 - 15959294
Alignment:
Q  46 ttagtcgatacccatacaaatgagcgggttcgaccaccaattgtgaataccaaaactaaaaactacattactagcttt 123  Q
    ||||||||| |||||||| |  || ||| ||||||||||||| ||| |||||||||||||||| ||||||||| ||||    
T  15959371 ttagtcgatgcccatacataaaagtgggctcgaccaccaattatgagtaccaaaactaaaaacaacattactaacttt 15959294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 46 - 115
Target Start/End: Complemental strand, 18651791 - 18651722
Alignment:
Q  46 ttagtcgatacccatacaaatgagcgggttcgaccaccaattgtgaataccaaaactaaaaactacatta 115  Q
    |||||| ||||||| ||| |  |||||||||||||||||||| ||| ||||||||||||| || ||||||    
T  18651791 ttagtcaatacccaaacataacagcgggttcgaccaccaattctgagtaccaaaactaaacacaacatta 18651722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 123
Target Start/End: Complemental strand, 14373519 - 14373471
Alignment:
Q  75 tcgaccaccaattgtgaataccaaaactaaaaactacattactagcttt 123  Q
    ||||||||||||| ||||||||| | |||||||| ||||||||||||||    
T  14373519 tcgaccaccaattatgaataccatagctaaaaacaacattactagcttt 14373471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 32536507 - 32536555
Alignment:
Q  75 tcgaccaccaattgtgaataccaaaactaaaaactacattactagcttt 123  Q
    ||||||||||||| | | |||||||||||||||| |||||| |||||||    
T  32536507 tcgaccaccaattattagtaccaaaactaaaaacaacattaatagcttt 32536555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 7e-31; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 44 - 124
Target Start/End: Original strand, 33169239 - 33169319
Alignment:
Q  44 agttagtcgatacccatacaaatgagcgggttcgaccaccaattgtgaataccaaaactaaaaactacattactagctttc 124  Q
    |||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  33169239 agttagtcaatacccatacaaatgagcgggttcgaccaccaattataaataccaaaactaaaaactacattactagctttc 33169319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 34 - 124
Target Start/End: Complemental strand, 8941977 - 8941887
Alignment:
Q  34 gatataaggcagttagtcgatacccatacaaatgagcgggttcgaccaccaattgtgaataccaaaactaaaaactacattactagctttc 124  Q
    |||||||| ||||| ||||||||| ||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  8941977 gatataagacagttggtcgatacctatatatatgagcgggttcgaccaccaattatgaataccaaaactaaaaactacattactagctttc 8941887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 46 - 124
Target Start/End: Original strand, 32228387 - 32228465
Alignment:
Q  46 ttagtcgatacccatacaaatgagcgggttcgaccaccaattgtgaataccaaaactaaaaactacattactagctttc 124  Q
    ||||||||||||||||||  ||||||||||||| |||||||| ||| |||||||||||||||| |||||||||||||||    
T  32228387 ttagtcgatacccatacatttgagcgggttcgatcaccaattatgagtaccaaaactaaaaacaacattactagctttc 32228465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 47 - 121
Target Start/End: Original strand, 24407537 - 24407611
Alignment:
Q  47 tagtcgatacccatacaaatgagcgggttcgaccaccaattgtgaataccaaaactaaaaactacattactagct 121  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||   ||||||||||    
T  24407537 tagtcgatacccatacatatgagcgggttcgaccaccaattatgaattccaaaactaaaaacagaattactagct 24407611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 124
Target Start/End: Original strand, 26072478 - 26072554
Alignment:
Q  48 agtcgatacccatacaaatgagcgggttcgaccaccaattgtgaataccaaaactaaaaactacattactagctttc 124  Q
    |||| ||||||||||| | ||||||||||||||||||||| ||| || | |||||||| || |||||||||||||||    
T  26072478 agtcaatacccatacataagagcgggttcgaccaccaattatgagtatcgaaactaaagacaacattactagctttc 26072554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 208 - 338
Target Start/End: Complemental strand, 23112103 - 23111973
Alignment:
Q  208 caaaacaccattaaatcatcagcatagaaacaatgggaaggaatattggcttttctagaagctttgattaattcaactttcccatcatccacaagtttct 307  Q
    |||||||||||||| ||||||||| | |||||||| || |||||||  |||  ||||||||| |||||||| |  ||||| |||||||||||||||||      
T  23112103 caaaacaccattaagtcatcagcaaaaaaacaatgagagggaatatgagctgatctagaagccttgattaaattcactttaccatcatccacaagttttc 23112004  T
Q  308 tgatacctctactaagaacttcctcagctaa 338  Q
    ||||||| ||||| || ||||| || |||||    
T  23112003 tgatacccctactgaggacttcttctgctaa 23111973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 124
Target Start/End: Complemental strand, 12258006 - 12257930
Alignment:
Q  48 agtcgatacccatacaaatgagcgggttcgaccaccaattgtgaataccaaaactaaaaactacattactagctttc 124  Q
    ||||||||| |||||| | |||||||||||||||||| || ||| ||||||||||| |||| || ||||||||||||    
T  12258006 agtcgatactcatacataagagcgggttcgaccaccagttatgagtaccaaaactagaaacaacgttactagctttc 12257930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 124
Target Start/End: Complemental strand, 12265398 - 12265322
Alignment:
Q  48 agtcgatacccatacaaatgagcgggttcgaccaccaattgtgaataccaaaactaaaaactacattactagctttc 124  Q
    ||||||||| |||||| | |||||||||||||||||| || ||| ||||||||||| |||| || ||||||||||||    
T  12265398 agtcgatactcatacataagagcgggttcgaccaccagttatgagtaccaaaactagaaacaacgttactagctttc 12265322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 123
Target Start/End: Complemental strand, 34137491 - 34137443
Alignment:
Q  75 tcgaccaccaattgtgaataccaaaactaaaaactacattactagcttt 123  Q
    ||||||||||||| ||| ||||||| |||||||| ||||||||||||||    
T  34137491 tcgaccaccaattatgagtaccaaagctaaaaacaacattactagcttt 34137443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 125
Target Start/End: Original strand, 28415749 - 28415806
Alignment:
Q  68 agcgggttcgaccaccaattgtgaataccaaaactaaaaactacattactagctttct 125  Q
    |||||| ||||||||||||| ||  |||||||| |||| || ||||||||||||||||    
T  28415749 agcgggctcgaccaccaattatgtgtaccaaaattaaagaccacattactagctttct 28415806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 124
Target Start/End: Original strand, 2529491 - 2529547
Alignment:
Q  68 agcgggttcgaccaccaattgtgaataccaaaactaaaaactacattactagctttc 124  Q
    |||||| ||||||||||||  ||  |||||||| ||||||| |||||||||||||||    
T  2529491 agcgggctcgaccaccaatcatgtgtaccaaaattaaaaaccacattactagctttc 2529547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 116
Target Start/End: Original strand, 9922206 - 9922254
Alignment:
Q  68 agcgggttcgaccaccaattgtgaataccaaaactaaaaactacattac 116  Q
    |||||| |||||||||| | |||| |||||||||||||||| |||||||    
T  9922206 agcgggctcgaccaccactggtgagtaccaaaactaaaaacaacattac 9922254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 124
Target Start/End: Original strand, 13199728 - 13199784
Alignment:
Q  68 agcgggttcgaccaccaattgtgaataccaaaactaaaaactacattactagctttc 124  Q
    |||||| ||||||||||||| ||  |||||||| |||| || |||||||||||||||    
T  13199728 agcgggctcgaccaccaattatgtgtaccaaaattaaagaccacattactagctttc 13199784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 46 - 124
Target Start/End: Original strand, 48394487 - 48394565
Alignment:
Q  46 ttagtcgatacccatacaaatgagcgggttcgaccaccaattgtgaataccaaaactaaaaactacattactagctttc 124  Q
    ||||| |||||||||||| |  |||||||||||||||||||| ||| |||| ||| |||| || |||||||||||||||    
T  48394487 ttagtggatacccatacataatagcgggttcgaccaccaattatgagtaccgaaattaaagacaacattactagctttc 48394565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 187 - 243
Target Start/End: Original strand, 34244422 - 34244478
Alignment:
Q  187 aaactagacatcttacctttgcaaaacaccattaaatcatcagcatagaaacaatgg 243  Q
    ||||| ||||||||  |||||||||||||||||||||||||| |||| |||||||||    
T  34244422 aaacttgacatcttcgctttgcaaaacaccattaaatcatcaacataaaaacaatgg 34244478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 124
Target Start/End: Original strand, 37254345 - 37254419
Alignment:
Q  50 tcgatacccatacaaatgagcgggttcgaccaccaattgtgaataccaaaactaaaaactacattactagctttc 124  Q
    |||||||||||||| |   ||||| ||||||||||||| ||  |||||||| |||| ||||||||||||||||||    
T  37254345 tcgatacccatacataaatgcgggctcgaccaccaattatgtgtaccaaaattaaagactacattactagctttc 37254419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 173 - 236
Target Start/End: Complemental strand, 33606325 - 33606262
Alignment:
Q  173 ctttcaaagcttcgaaactagacatcttacctttgcaaaacaccattaaatcatcagcatagaa 236  Q
    ||||||| ||||| |||||||| |  |||||||| ||||||||||| ||||||||| |||||||    
T  33606325 ctttcaatgcttctaaactagaaagtttacctttacaaaacaccatgaaatcatcaacatagaa 33606262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 124
Target Start/End: Original strand, 25619046 - 25619120
Alignment:
Q  50 tcgatacccatacaaatgagcgggttcgaccaccaattgtgaataccaaaactaaaaactacattactagctttc 124  Q
    |||||||||||||| |  ||||||||| |||||||  ||||  |||||| | |||| ||||||||||||||||||    
T  25619046 tcgatacccatacataaaagcgggttcaaccaccacatgtgtgtaccaacattaaagactacattactagctttc 25619120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 124
Target Start/End: Complemental strand, 41698692 - 41698618
Alignment:
Q  50 tcgatacccatacaaatgagcgggttcgaccaccaattgtgaataccaaaactaaaaactacattactagctttc 124  Q
    ||||| |||||||| |  |||||| ||||||||||||| ||| |||||||  |||| || |||||||||||||||    
T  41698692 tcgatgcccatacatacaagcgggctcgaccaccaattatgagtaccaaatgtaaagaccacattactagctttc 41698618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 87
Target Start/End: Original strand, 32703527 - 32703580
Alignment:
Q  34 gatataaggcagttagtcgatacccatacaaatgagcgggttcgaccaccaatt 87  Q
    |||| ||| ||||||||||||| | ||||| |||||||| ||||||||||||||    
T  32703527 gatacaagacagttagtcgatatctatacatatgagcggattcgaccaccaatt 32703580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 116
Target Start/End: Original strand, 17720249 - 17720297
Alignment:
Q  68 agcgggttcgaccaccaattgtgaataccaaaactaaaaactacattac 116  Q
    |||||| |||||||||| | |||| |||||||||||||||| |||||||    
T  17720249 agcgggctcgaccaccactggtgagtaccaaaactaaaaacaacattac 17720297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 120
Target Start/End: Original strand, 29967580 - 29967632
Alignment:
Q  68 agcgggttcgaccaccaattgtgaataccaaaactaaaaactacattactagc 120  Q
    |||||| |||||||||| |  ||| |||||||||||||||| |||||||||||    
T  29967580 agcgggctcgaccaccactgatgagtaccaaaactaaaaacaacattactagc 29967632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 77 - 124
Target Start/End: Complemental strand, 6535 - 6488
Alignment:
Q  77 gaccaccaattgtgaataccaaaactaaaaactacattactagctttc 124  Q
    ||||||||||| ||| ||||||||||||| || |||||||||||||||    
T  6535 gaccaccaattttgagtaccaaaactaaatacaacattactagctttc 6488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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