View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14758_low_25 (Length: 344)
Name: NF14758_low_25
Description: NF14758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14758_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 8 - 329
Target Start/End: Complemental strand, 2629798 - 2629474
Alignment:
| Q |
8 |
gaatatataaaggaaactcatagacaagattgaaacaagaaagnnnnnnngaacaatggttcgaaaaggtgatattgtttgggtaagagaaatttacttc |
107 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| | ||| |
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| T |
2629798 |
gaatatataaaggaaactcataaacaagattgaaacaagaaagaaaaaaagaagaatggttcgaaaaggtgatattgtttgggtaagagaaattcagttc |
2629699 |
T |
|
| Q |
108 |
cctcacaacaacaac---tacaattggtctccagctttagttaaatcttccaacaacctcggcatctcactttccttcttcaacaaccccaaccccacac |
204 |
Q |
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||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2629698 |
cctcacaacaacaacaactacaattggtctccagctttagttacatcttccaaccacctcggcatctcactttccttcttcaacaaccccaacaccacac |
2629599 |
T |
|
| Q |
205 |
aacgcaccttctttcttcaatccgaggttattcctttcgatgaattacccttttcaaacgatacatttcaatgcgaagcgttccgttctgcacttaggtt |
304 |
Q |
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|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
2629598 |
aacgcaccttctttcttcaatccgaagttattcctttcgatgaattacccttttcaaacgatacatttcaatgcgaagccttccgttctgcacttaggtt |
2629499 |
T |
|
| Q |
305 |
attcggtctcagaatcgtttcaagt |
329 |
Q |
| |
|
||||||||||||||||||||||||| |
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| T |
2629498 |
attcggtctcagaatcgtttcaagt |
2629474 |
T |
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