View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14758_low_26 (Length: 341)
Name: NF14758_low_26
Description: NF14758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14758_low_26 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 52720241 - 52720562
Alignment:
| Q |
1 |
ccatggatactcctcatagcaacatatatcacaaggcaatatttaatttgtttactttatttgaatgtattatataaataattacgtatttttcatgtta |
100 |
Q |
| |
|
|||||| ||||||||||||||| |||||| |||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
52720241 |
ccatggttactcctcatagcaatatatattacaaggcaatattt-----gtatactttatttgaatgtattatataaataattacacatttttcatgtta |
52720335 |
T |
|
| Q |
101 |
tgtcatattgttttaaatttnnnnnnnn--caggaggaaatggaatcgagtagcttggtaagcaatggccgcgtggatcggcatggtaggattgctgata |
198 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52720336 |
tgtcatattgttttaaatttaaaaaaaaaacaggaggaaatggaatcgagtagcttggtaagcaatggccgcgtggatcggcatggtaggattgctgata |
52720435 |
T |
|
| Q |
199 |
aaagaacaactggaggatggaaggcagctcccttcatcataagtatgaactaaacactacattatgaaattatacagaatcatcacaatgtattatgtac |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
52720436 |
aaagaacaactggaggatggaaggcagctcccttcatcataagtatgaactaaatactacattattacattatacagaatcatcacaatgtattatgtac |
52720535 |
T |
|
| Q |
299 |
acataattttaatatatgataggtatt |
325 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
52720536 |
acataattttaatatatgataggtatt |
52720562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 52711354 - 52711650
Alignment:
| Q |
1 |
ccatggatactcctcatagcaacatatatcacaaggcaatatttaatttgtttactttatttgaatgtattatataaataattacgtatttttcatgtta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52711354 |
ccatggatactcctcatagcaacatatatcacaaggcaatattt-----gtttactttatttgaatgtattatataaataattacgtatttttcatgtta |
52711448 |
T |
|
| Q |
101 |
tgtcatattgttttaaatttnnnnnnnncaggaggaaatggaatcgagtagcttggtaagcaatggccgcgtggatcggcatggtaggattgctgataaa |
200 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||| |
|
|
| T |
52711449 |
tgtcatattgttttgaattttataaaa-caggaggaaatggaatcgagtagcttggtaagcaatggccgtgtggatcggcaaggtaggattgctaataaa |
52711547 |
T |
|
| Q |
201 |
agaacaactggaggatggaaggcagctcccttcatcataagtatgaactaaacactacattatgaaattatacagaatcatcacaatgtattatgtacac |
300 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
52711548 |
agaacaaccggaggatggaaggcagctcccttcatcataagtatgaactaaatactacattattaaattatacagaatcatcacaatgtattatgtacac |
52711647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 129 - 258
Target Start/End: Original strand, 52697816 - 52697945
Alignment:
| Q |
129 |
caggaggaaatggaatcgagtagcttggtaagcaatggccgcgtggatcggcatggtaggattgctgataaaagaacaactggaggatggaaggcagctc |
228 |
Q |
| |
|
|||||||||||||| | || ||||||||| || |||| || |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
52697816 |
caggaggaaatggatttgaatagcttggtgagtaatgatcgtgtggataggcatggtaggattgctgataaacgaacaactggaggatggaaggcagctc |
52697915 |
T |
|
| Q |
229 |
ccttcatcataagtatgaactaaacactac |
258 |
Q |
| |
|
||| |||||| ||||||| |||| ||||| |
|
|
| T |
52697916 |
cctatatcatatgtatgaaataaatactac |
52697945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University