View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14758_low_29 (Length: 284)
Name: NF14758_low_29
Description: NF14758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14758_low_29 |
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| [»] scaffold0459 (1 HSPs) |
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| [»] scaffold0366 (1 HSPs) |
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Alignment Details
Target: scaffold0459 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: scaffold0459
Description:
Target: scaffold0459; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 122 - 266
Target Start/End: Original strand, 7417 - 7561
Alignment:
| Q |
122 |
agaatggtactccatagtctgcaatgaaacttctcaaccaacctgctcaataaacaaacaatgtcagattccttactccaaccatggtaatgattgatcc |
221 |
Q |
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| T |
7417 |
agaatggtactccatagtctgcaatgaaacttctcaaccaacctgctcaataaacaaacaatgtcagattccttactccaaccatggtaatgattgatcc |
7516 |
T |
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| Q |
222 |
gggttgtgtgcagtcgcaacctcatgactgcatatagatggccac |
266 |
Q |
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| T |
7517 |
gggttgtgtgcagtcgcaacctcatgactgcatatagatggccac |
7561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0366 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: scaffold0366
Description:
Target: scaffold0366; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 122 - 266
Target Start/End: Original strand, 7413 - 7557
Alignment:
| Q |
122 |
agaatggtactccatagtctgcaatgaaacttctcaaccaacctgctcaataaacaaacaatgtcagattccttactccaaccatggtaatgattgatcc |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7413 |
agaatggtactccatagtctgcaatgaaacttctcaaccaacctgctcaataaacaaacaatgtcagattccttactccaaccatggtaatgattgatcc |
7512 |
T |
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| Q |
222 |
gggttgtgtgcagtcgcaacctcatgactgcatatagatggccac |
266 |
Q |
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| T |
7513 |
gggttgtgtgcagtcgcaacctcatgactgcatatagatggccac |
7557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 13 - 100
Target Start/End: Complemental strand, 6729381 - 6729294
Alignment:
| Q |
13 |
tcatcacactaccccccttaccgtacctctttcgcaaacccaaacctatggctatttcactcagccgattgttaacacatcgatctat |
100 |
Q |
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| T |
6729381 |
tcatcacactaccccccttaccgtacctctttcacaaacccaaacctatggctatttcactcagccgattgttaacacatcgatctat |
6729294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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