View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14758_low_3 (Length: 561)
Name: NF14758_low_3
Description: NF14758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14758_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-150; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 34 - 416
Target Start/End: Complemental strand, 2791422 - 2791041
Alignment:
| Q |
34 |
ttaccttctaataatccttgagaaggttatggttgtatcgcctataaattgaaaaatacaggatagcaaacccttcggtcactatt--aaaaattaaagt |
131 |
Q |
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| T |
2791422 |
ttaccttctaataatccttgagaagattatggttgtatcgcttataaattgaagaatacaggacagctaacccttcagtcactgttttaaaaattaaagt |
2791323 |
T |
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| Q |
132 |
gggaaaatgtatctcgttatcccaactctttttgcttcaaactcattcacaggactactagtgagtccctttgtaaacaacatgaaatcaagaacattct |
231 |
Q |
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| T |
2791322 |
gggaaaatgtatctccttatcccaaccctttttgcttcaaactcattcacaggactactagtgagtccctttgtaaacaacatgaaatcaagaacattct |
2791223 |
T |
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| Q |
232 |
aatttattgagtcatacgtcgttttgaaattaacttctaaataaaagaaaatacgttctttnnnnnnnnnntgtggccaattctatgaagtcatctacaa |
331 |
Q |
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| T |
2791222 |
aatttattgagtcatatgtcgttttgaaattaacttctaaataaaagaaaatacgttctttaaaaaaaaaacgtggccaattctatgaagtcatctacaa |
2791123 |
T |
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| Q |
332 |
ttacaacaccgattattaagaaagttatgcaataggattatatgcaaggtccaaagtggtgaagtattcagacgttagagttgat |
416 |
Q |
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| T |
2791122 |
ttacaa---cgattattaagaaagttatgcaataggactatatgcaaggtccaaagtagcgaagtattcagacgttagtgttgat |
2791041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 411 - 542
Target Start/End: Complemental strand, 2790656 - 2790525
Alignment:
| Q |
411 |
gttgattaagatttgagtatgatttaaaacttaagaacaattgatgcacctaaaggtttcaatattttttattcaacaaccgtgtctttttcaataggga |
510 |
Q |
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| T |
2790656 |
gttgattaagatttgagtatgatttaaaacttaagaacaattgatgtacctaaaggtttcaatatttttgattcaacaaccgtatctttttcaataggga |
2790557 |
T |
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| Q |
511 |
aaaagttcaacttgaccatagaatcaaggtat |
542 |
Q |
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| T |
2790556 |
aaaggttcaacttgaccatagaatcaaggtat |
2790525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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