View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14758_low_32 (Length: 256)

Name: NF14758_low_32
Description: NF14758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14758_low_32
NF14758_low_32
[»] chr2 (3 HSPs)
chr2 (1-165)||(3083126-3083289)
chr2 (43-165)||(38403950-38404072)
chr2 (171-252)||(38404139-38404220)
[»] chr1 (3 HSPs)
chr1 (3-165)||(40909877-40910038)
chr1 (171-252)||(33814113-33814194)
chr1 (171-252)||(33873583-33873664)
[»] scaffold0036 (2 HSPs)
scaffold0036 (43-165)||(99540-99662)
scaffold0036 (171-252)||(99729-99810)
[»] chr8 (1 HSPs)
chr8 (117-165)||(24469255-24469303)


Alignment Details
Target: chr2 (Bit Score: 97; Significance: 9e-48; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 3083126 - 3083289
Alignment:
Q  1 tgaggagactgctattggagttaacatacatgtgcacaagccttaattggaataactacatcttatgcatgaggaactttcacttggtttgagcattaaa 100  Q
    |||||| |||||||||||||||||||||||||||||||| | |||||||||| | |||||||||||||| |||||||||||| |||||||||| ||||||    
T  3083126 tgaggaaactgctattggagttaacatacatgtgcacaaactttaattggaacagctacatcttatgcaagaggaactttcatttggtttgagaattaaa 3083225  T
Q  101 ggttgcttacctcacgattttaagtagctatttgactgcattttctttgagaaaacaatggctac 165  Q
    |||| ||||||||| |||||  ||||||||||| |||||||| ||| |||| |||||||||||||    
T  3083226 ggttacttacctca-gatttatagtagctatttaactgcattctctctgagcaaacaatggctac 3083289  T

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Target: chr2; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 43 - 165
Target Start/End: Original strand, 38403950 - 38404072
Alignment:
Q  43 ttaattggaataactacatcttatgcatgaggaactttcacttggtttgagcattaaaggttgcttacctcacgattttaagtagctatttgactgcatt 142  Q
    ||||||| ||||||||||||||| |    ||  |||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  38403950 ttaattgtaataactacatcttaagttgcagctactttcacttaggttgagcattaaaggttgcttacctcaggattttaagtagctatttgactgcatt 38404049  T
Q  143 ttctttgagaaaacaatggctac 165  Q
     ||| |||| |||||||||||||    
T  38404050 ctctctgagcaaacaatggctac 38404072  T

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Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 171 - 252
Target Start/End: Original strand, 38404139 - 38404220
Alignment:
Q  171 aaattaacgtgataatttttgtgtttcttactttgtttgaattgattgaaattgaaaagtaattattgttattgatattctt 252  Q
    |||||||| ||| ||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  38404139 aaattaacttgagaatttttttgtttctttctttgtttgaattgattgaaattgaaaagtgattattgttattgattttctt 38404220  T

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Target: chr1 (Bit Score: 95; Significance: 1e-46; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 3 - 165
Target Start/End: Original strand, 40909877 - 40910038
Alignment:
Q  3 aggagactgctattggagttaacatacatgtgcacaagccttaattggaataactacatcttatgcatgaggaactttcacttggtttgagcattaaagg 102  Q
    |||| |||||||||||||||||||||||||||||||| | |||||||||| | |||||||||||||| |||||||||||| |||||||||| ||||||||    
T  40909877 aggaaactgctattggagttaacatacatgtgcacaaactttaattggaacagctacatcttatgcaagaggaactttcatttggtttgagaattaaagg 40909976  T
Q  103 ttgcttacctcacgattttaagtagctatttgactgcattttctttgagaaaacaatggctac 165  Q
    || ||||||||| |||||  ||||||||||| |||||||| ||| |||| |||||||||||||    
T  40909977 ttacttacctca-gatttatagtagctatttaactgcattctctctgagcaaacaatggctac 40910038  T

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Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 171 - 252
Target Start/End: Original strand, 33814113 - 33814194
Alignment:
Q  171 aaattaacgtgataatttttgtgtttcttactttgtttgaattgattgaaattgaaaagtaattattgttattgatattctt 252  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  33814113 aaattaacttgataatttttgtgtttcttcctttgtttgaattgattgaaattgaaaagtgattattgttattgattttctt 33814194  T

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Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 171 - 252
Target Start/End: Original strand, 33873583 - 33873664
Alignment:
Q  171 aaattaacgtgataatttttgtgtttcttactttgtttgaattgattgaaattgaaaagtaattattgttattgatattctt 252  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  33873583 aaattaacttgataatttttgtgtttcttcctttgtttgaattgattgaaattgaaaagtgattattgttattgattttctt 33873664  T

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Target: scaffold0036 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 43 - 165
Target Start/End: Original strand, 99540 - 99662
Alignment:
Q  43 ttaattggaataactacatcttatgcatgaggaactttcacttggtttgagcattaaaggttgcttacctcacgattttaagtagctatttgactgcatt 142  Q
    ||||||| ||||||||||||||| |    ||  |||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  99540 ttaattgtaataactacatcttaagttgcagctactttcacttaggttgagcattaaaggttgcttacctcaggattttaagtagctatttgactgcatt 99639  T
Q  143 ttctttgagaaaacaatggctac 165  Q
     ||| |||| |||||||||||||    
T  99640 ctctctgagcaaacaatggctac 99662  T

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Target: scaffold0036; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 171 - 252
Target Start/End: Original strand, 99729 - 99810
Alignment:
Q  171 aaattaacgtgataatttttgtgtttcttactttgtttgaattgattgaaattgaaaagtaattattgttattgatattctt 252  Q
    |||||||| ||| ||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  99729 aaattaacttgagaatttttttgtttctttctttgtttgaattgattgaaattgaaaagtgattattgttattgattttctt 99810  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 165
Target Start/End: Complemental strand, 24469303 - 24469255
Alignment:
Q  117 attttaagtagctatttgactgcattttctttgagaaaacaatggctac 165  Q
    ||||||||||||||||||||  |||| ||| |||| |||||||||||||    
T  24469303 attttaagtagctatttgaccacattctctctgagcaaacaatggctac 24469255  T

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