View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14758_low_35 (Length: 248)

Name: NF14758_low_35
Description: NF14758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14758_low_35
NF14758_low_35
[»] chr8 (14 HSPs)
chr8 (2-99)||(16428146-16428243)
chr8 (2-98)||(40557396-40557492)
chr8 (2-98)||(13279810-13279906)
chr8 (2-98)||(22513813-22513909)
chr8 (2-99)||(36896621-36896718)
chr8 (2-98)||(33441348-33441444)
chr8 (5-98)||(6416574-6416667)
chr8 (5-98)||(18385671-18385764)
chr8 (5-99)||(12501740-12501834)
chr8 (5-98)||(39622170-39622263)
chr8 (5-95)||(9220023-9220113)
chr8 (5-93)||(16888850-16888937)
chr8 (22-98)||(31726196-31726273)
chr8 (8-98)||(29089185-29089275)
[»] chr6 (8 HSPs)
chr6 (2-99)||(14175404-14175501)
chr6 (2-99)||(14179940-14180037)
chr6 (2-99)||(4271678-4271775)
chr6 (5-98)||(18903191-18903284)
chr6 (5-98)||(22510273-22510366)
chr6 (5-98)||(19420162-19420255)
chr6 (9-99)||(19420586-19420676)
chr6 (192-232)||(2215057-2215097)
[»] chr3 (18 HSPs)
chr3 (2-99)||(44516911-44517008)
chr3 (2-99)||(54610146-54610243)
chr3 (2-102)||(1003078-1003178)
chr3 (2-98)||(38190524-38190620)
chr3 (2-98)||(43844791-43844887)
chr3 (2-99)||(35350870-35350967)
chr3 (2-98)||(10122746-10122842)
chr3 (2-95)||(30106651-30106744)
chr3 (2-98)||(26706181-26706277)
chr3 (5-98)||(22397814-22397907)
chr3 (5-98)||(33957253-33957346)
chr3 (5-93)||(33955878-33955966)
chr3 (5-99)||(3345000-3345094)
chr3 (5-99)||(28418421-28418515)
chr3 (5-98)||(37964781-37964874)
chr3 (5-98)||(4066770-4066863)
chr3 (5-98)||(23302204-23302297)
chr3 (5-93)||(23302855-23302943)
[»] chr7 (13 HSPs)
chr7 (2-98)||(18784674-18784770)
chr7 (2-98)||(35113343-35113439)
chr7 (2-98)||(37316146-37316242)
chr7 (2-98)||(44045614-44045710)
chr7 (2-98)||(42046585-42046681)
chr7 (2-98)||(35504827-35504923)
chr7 (5-99)||(42049297-42049391)
chr7 (5-98)||(21954234-21954327)
chr7 (5-95)||(34643876-34643966)
chr7 (5-98)||(46804756-46804849)
chr7 (5-102)||(6612643-6612740)
chr7 (5-98)||(47400821-47400914)
chr7 (5-99)||(19297205-19297300)
[»] chr5 (14 HSPs)
chr5 (2-98)||(22721364-22721460)
chr5 (2-98)||(36789747-36789843)
chr5 (2-98)||(16475572-16475668)
chr5 (2-98)||(23107591-23107687)
chr5 (2-98)||(25336051-25336147)
chr5 (2-99)||(1212738-1212835)
chr5 (2-99)||(28969608-28969705)
chr5 (5-99)||(16478168-16478262)
chr5 (5-99)||(40830468-40830562)
chr5 (5-99)||(39565276-39565370)
chr5 (5-98)||(5812597-5812690)
chr5 (5-98)||(1598721-1598814)
chr5 (5-98)||(22497021-22497114)
chr5 (5-102)||(22386979-22387076)
[»] chr4 (13 HSPs)
chr4 (2-98)||(27071017-27071113)
chr4 (2-98)||(27151103-27151199)
chr4 (2-98)||(4943174-4943270)
chr4 (2-99)||(7509448-7509545)
chr4 (2-98)||(9768655-9768751)
chr4 (5-99)||(5943855-5943949)
chr4 (38-99)||(6243528-6243589)
chr4 (5-98)||(48425926-48426019)
chr4 (5-83)||(34802059-34802137)
chr4 (9-98)||(25887402-25887491)
chr4 (32-98)||(36353293-36353359)
chr4 (21-99)||(27024597-27024675)
chr4 (5-89)||(48945124-48945208)
[»] chr2 (9 HSPs)
chr2 (2-98)||(12256718-12256814)
chr2 (2-98)||(42843080-42843176)
chr2 (5-99)||(40263415-40263509)
chr2 (5-100)||(4651507-4651602)
chr2 (5-98)||(3555042-3555135)
chr2 (5-98)||(6904285-6904378)
chr2 (2-59)||(39122562-39122619)
chr2 (9-102)||(4720930-4721023)
chr2 (5-98)||(42224050-42224141)
[»] chr1 (17 HSPs)
chr1 (2-98)||(13496522-13496618)
chr1 (2-98)||(42435651-42435747)
chr1 (2-99)||(32049743-32049840)
chr1 (2-99)||(24455371-24455468)
chr1 (5-102)||(45536862-45536959)
chr1 (5-100)||(24775443-24775538)
chr1 (5-99)||(2023038-2023132)
chr1 (5-99)||(38984614-38984708)
chr1 (5-98)||(18410217-18410310)
chr1 (5-98)||(21332915-21333008)
chr1 (5-98)||(28645847-28645940)
chr1 (5-98)||(32524042-32524135)
chr1 (5-98)||(43643239-43643332)
chr1 (21-99)||(49004873-49004951)
chr1 (5-102)||(20274398-20274495)
chr1 (5-98)||(42829924-42830017)
chr1 (40-98)||(2840351-2840409)
[»] scaffold0088 (4 HSPs)
scaffold0088 (5-98)||(10643-10736)
scaffold0088 (5-89)||(1330-1414)
scaffold0088 (9-89)||(8724-8804)
scaffold0088 (9-89)||(25219-25299)
[»] scaffold0009 (1 HSPs)
scaffold0009 (5-98)||(198967-199060)
[»] scaffold0368 (1 HSPs)
scaffold0368 (5-98)||(9980-10073)
[»] scaffold1289 (1 HSPs)
scaffold1289 (9-89)||(255-335)
[»] scaffold0781 (1 HSPs)
scaffold0781 (192-232)||(3514-3554)


Alignment Details
Target: chr8 (Bit Score: 94; Significance: 5e-46; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 2 - 99
Target Start/End: Complemental strand, 16428243 - 16428146
Alignment:
Q  2 catatgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagata 99  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16428243 catatgccaagtaggcttttgatgaggtggacatccttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagata 16428146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 2 - 98
Target Start/End: Complemental strand, 40557492 - 40557396
Alignment:
Q  2 catatgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 98  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  40557492 catatgccaagtaggcttttgatgaggtggacatccttagaggaaaggaatttgaattaggctatttctaagaactctaaattgttagtataaagat 40557396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 2 - 98
Target Start/End: Original strand, 13279810 - 13279906
Alignment:
Q  2 catatgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 98  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  13279810 catatgccaagtaggcttttgatgaggtggacatccttagagcaaaggaatttgaaataggctatttctaaaaactctaaattgttagtataaagat 13279906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 2 - 98
Target Start/End: Complemental strand, 22513909 - 22513813
Alignment:
Q  2 catatgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 98  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  22513909 catatgccaagtaggcttttgataaggtggacatccttagaggaaaggaatttgaattaggctatttctaagaactctaaattgttagtataaagat 22513813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 2 - 99
Target Start/End: Original strand, 36896621 - 36896718
Alignment:
Q  2 catatgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagata 99  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||    
T  36896621 catatgccaagtaggcttttgatgaggtggacatccttagaggaaaggaatttaaaatagactatttctaaaaactctaaattgttagtataaagata 36896718  T

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Target: chr8; HSP #6
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 2 - 98
Target Start/End: Complemental strand, 33441444 - 33441348
Alignment:
Q  2 catatgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 98  Q
    ||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  33441444 catatgccatgtaggcttttgatgaggtggacacccttagaggaaaggaatttgaaataagctatttctaaaaactctaaattgttagtataaagat 33441348  T

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Target: chr8; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 5 - 98
Target Start/End: Complemental strand, 6416667 - 6416574
Alignment:
Q  5 atgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 98  Q
    ||||||| |||| || |||||| |||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  6416667 atgccaattaggattatgatgatgtggacatctttagaggagaggattttgaaataggctatttctaaaaactctaaattgttagtataaagat 6416574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 5 - 98
Target Start/End: Original strand, 18385671 - 18385764
Alignment:
Q  5 atgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 98  Q
    ||||||| |||| || |||||| |||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  18385671 atgccaattaggattatgatgatgtggacatctttagaggagaggattttgaaataggctatttctaaaaactctaaattgttagtataaagat 18385764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 5 - 99
Target Start/End: Original strand, 12501740 - 12501834
Alignment:
Q  5 atgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagata 99  Q
    |||||||||||| || |||||| |||||||| ||||||||| |||| ||||||||||||||||||||| |||||||||||||||| |||||||||    
T  12501740 atgccaagtaggattatgatgatgtggacatttttagaggagaggattttgaaataggctatttctaaaaactctaaattgttagcataaagata 12501834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 5 - 98
Target Start/End: Original strand, 39622170 - 39622263
Alignment:
Q  5 atgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 98  Q
    |||||||||| | || || ||| |||||||||||||||| | |||| |||| |||||||||||||||| |||||||||||||||||||||||||    
T  39622170 atgccaagtatgattatggtgatgtggacatctttagagaagaggattttggaataggctatttctaaaaactctaaattgttagtataaagat 39622263  T

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Target: chr8; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 95
Target Start/End: Complemental strand, 9220113 - 9220023
Alignment:
Q  5 atgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaa 95  Q
    |||||| ||||| || |||||| |||||||||||||||||| || | |||| ||||| |||||||||| ||||||||||||||||||||||    
T  9220113 atgccacgtaggattatgatgatgtggacatctttagaggagagaattttggaatagactatttctaaaaactctaaattgttagtataaa 9220023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 93
Target Start/End: Original strand, 16888850 - 16888937
Alignment:
Q  5 atgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtata 93  Q
    |||||||||||| ||  ||||| |||||||||||||||||| |||  ||||||||| ||||||||||| ||||||||||||||||||||    
T  16888850 atgccaagtaggattaggatgatgtggacatctttagaggagaggt-tttgaaataagctatttctaaaaactctaaattgttagtata 16888937  T

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Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 98
Target Start/End: Complemental strand, 31726273 - 31726196
Alignment:
Q  22 gatgaggtggacatctttagaggaaaggaatttgaaataggctatttct-aagaactctaaattgttagtataaagat 98  Q
    ||||| ||||||||||||||| || |||| |||| |||| ||||||||| || |||||||||||||||||||||||||    
T  31726273 gatgatgtggacatctttagacgagaggattttggaataagctatttctaaaaaactctaaattgttagtataaagat 31726196  T

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Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 98
Target Start/End: Original strand, 29089185 - 29089275
Alignment:
Q  8 ccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 98  Q
    ||||||||| ||  ||||| ||| |||||||| ||||| |||| |||| ||||   ||||||||| |||||||||||||||||||||||||    
T  29089185 ccaagtaggattaggatgatgtgaacatctttggaggagaggattttggaataaattatttctaaaaactctaaattgttagtataaagat 29089275  T

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Target: chr6 (Bit Score: 94; Significance: 5e-46; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 2 - 99
Target Start/End: Complemental strand, 14175501 - 14175404
Alignment:
Q  2 catatgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagata 99  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14175501 catatgccaagtaggcttttgatgaggtggacatccttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagata 14175404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 2 - 99
Target Start/End: Complemental strand, 14180037 - 14179940
Alignment:
Q  2 catatgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagata 99  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14180037 catatgccaagtaggcttttgatgaggtggacatccttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagata 14179940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 2 - 99
Target Start/End: Original strand, 4271678 - 4271775
Alignment:
Q  2 catatgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagata 99  Q
    |||||| |||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  4271678 catatgtcaagtaggtttttgatgaggtggacatccttagaggaaaggaatttgaattaggctatttctaagaactctaaattgttagtataaagata 4271775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 5 - 98
Target Start/End: Original strand, 18903191 - 18903284
Alignment:
Q  5 atgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 98  Q
    ||||||| |||| || |||||| |||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  18903191 atgccaattaggattatgatgatgtggacatctttagaggagaggattttgaaataggctatttctaaaaactctaaattgttagtataaagat 18903284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 5 - 98
Target Start/End: Complemental strand, 22510366 - 22510273
Alignment:
Q  5 atgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 98  Q
    |||||||||||| || |||||| | |||||||||||||||| |||| |||| |||||||||||||||| |||||||||||||||||||||||||    
T  22510366 atgccaagtaggattatgatgatgcggacatctttagaggagaggattttggaataggctatttctaaaaactctaaattgttagtataaagat 22510273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 98
Target Start/End: Original strand, 19420162 - 19420255
Alignment:
Q  5 atgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 98  Q
    |||||||||| | ||  ||||| |||||||||||||||||| |||| |||| |||| ||||||||||| |||| ||||||||||||||||||||    
T  19420162 atgccaagtaagattaggatgatgtggacatctttagaggagaggattttggaataagctatttctaaaaactttaaattgttagtataaagat 19420255  T

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Target: chr6; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 99
Target Start/End: Complemental strand, 19420676 - 19420586
Alignment:
Q  9 caagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagata 99  Q
    |||||||| || ||||||   |||||||||||||||| |||| |||| |||| ||||||||||| ||||||||||| ||||||||||||||    
T  19420676 caagtaggattatgatgattaggacatctttagaggagaggattttggaataagctatttctaaaaactctaaattattagtataaagata 19420586  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 232
Target Start/End: Original strand, 2215057 - 2215097
Alignment:
Q  192 gaaataatgaaagaagctggcgattatttcaaactggtaat 232  Q
    |||||||||||||||| |||||||| ||||||||| |||||    
T  2215057 gaaataatgaaagaagttggcgattctttcaaacttgtaat 2215097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 5e-46; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 2 - 99
Target Start/End: Original strand, 44516911 - 44517008
Alignment:
Q  2 catatgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagata 99  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44516911 catatgccaagtaggcttttgatgaggtggacatccttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagata 44517008  T

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Target: chr3; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 2 - 99
Target Start/End: Complemental strand, 54610243 - 54610146
Alignment:
Q  2 catatgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagata 99  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  54610243 catatgccaagtaggcttttgatgaggtggacatccttagaggaaaggaatttgaaataggctatttttaagaactctaaattgttagtataaagata 54610146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 2 - 102
Target Start/End: Original strand, 1003078 - 1003178
Alignment:
Q  2 catatgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagataaa 101  Q
    ||||||||||||||||||||||||||||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1003078 catatgccaagtaggcttttgatgaggtggacattcttagagaaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagataaa 1003177  T
Q  102 g 102  Q
    |    
T  1003178 g 1003178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 2 - 98
Target Start/End: Original strand, 38190524 - 38190620
Alignment:
Q  2 catatgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 98  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  38190524 catatgccaagtaggcttttgatgaggtggacatccttagaggaaaggaatttaaaataggctatttctaagaactctaaattgttagtataaagat 38190620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 2 - 98
Target Start/End: Complemental strand, 43844887 - 43844791
Alignment:
Q  2 catatgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 98  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  43844887 catatgccaagtaggcttttgatgaggtggacatccttagaggaaaggaatttgaaataggctatttgtaagaactctaaattgttagtataaagat 43844791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 2 - 99
Target Start/End: Original strand, 35350870 - 35350967
Alignment:
Q  2 catatgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagata 99  Q
    ||||||||||||||||||||||||||||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35350870 catatgccaagtaggcttttgatgaggtggacatacttagagaaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagata 35350967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 2 - 98
Target Start/End: Original strand, 10122746 - 10122842
Alignment:
Q  2 catatgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 98  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  10122746 catatgccaagtaggcttttgatgagatggacatctttaaaggaaaggaatttaaaataggctatttctaagaactctaaattgttagtataaagat 10122842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 2 - 95
Target Start/End: Complemental strand, 30106744 - 30106651
Alignment:
Q  2 catatgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaa 95  Q
    ||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30106744 catataccaagtaggcttttgatgaggtggatatccttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaa 30106651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 2 - 98
Target Start/End: Original strand, 26706181 - 26706277
Alignment:
Q  2 catatgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 98  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  26706181 catatgccaagtaggcttttgatgaggtggacattcttagaggaaagaaatttaaaatagactatttctaagaactctaaattgttagtataaagat 26706277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 5 - 98
Target Start/End: Complemental strand, 22397907 - 22397814
Alignment:
Q  5 atgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 98  Q
    |||||||||||| || |||||| ||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||    
T  22397907 atgccaagtaggattatgatgatgtggacatctttagaggaaaggattttgaaataagctatttctaaaaactctaaattgttagtataaagat 22397814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 5 - 98
Target Start/End: Original strand, 33957253 - 33957346
Alignment:
Q  5 atgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 98  Q
    |||||||||| | || |||||| ||| |||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  33957253 atgccaagtaagattatgatgatgtgaacatctttagaggagaggattttgaaataggctatttctaaaaactctaaattgttagtataaagat 33957346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 5 - 93
Target Start/End: Original strand, 33955878 - 33955966
Alignment:
Q  5 atgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtata 93  Q
    |||||||||||| || |||||| |||||||||||||||||| |||| |||| |||||||||||||||| ||||||||||||||||||||    
T  33955878 atgccaagtaggattatgatgatgtggacatctttagaggagaggattttggaataggctatttctaaaaactctaaattgttagtata 33955966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 5 - 99
Target Start/End: Original strand, 3345000 - 3345094
Alignment:
Q  5 atgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagata 99  Q
    |||||||||||| || |||||  |||||||||||||||| | |||| |||| |||||||||||||||| |||| |||||||||||||||||||||    
T  3345000 atgccaagtaggattatgatggtgtggacatctttagagaagaggattttggaataggctatttctaaaaactttaaattgttagtataaagata 3345094  T

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Target: chr3; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 5 - 99
Target Start/End: Original strand, 28418421 - 28418515
Alignment:
Q  5 atgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagata 99  Q
    |||||| ||||| || |||||| |||||||||||||||||| || | |||| |||| ||||||||||| ||||||||||||||||||||||||||    
T  28418421 atgccacgtaggattatgatgatgtggacatctttagaggagagaattttggaatatgctatttctaaaaactctaaattgttagtataaagata 28418515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 5 - 98
Target Start/End: Complemental strand, 37964874 - 37964781
Alignment:
Q  5 atgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 98  Q
    |||||| ||||| || |||||| |||||||||||||||||| || | |||| |||||||||||||||| ||||||||||||||| |||||||||    
T  37964874 atgccacgtaggattatgatgatgtggacatctttagaggagagaattttggaataggctatttctaaaaactctaaattgttaatataaagat 37964781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 98
Target Start/End: Original strand, 4066770 - 4066863
Alignment:
Q  5 atgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 98  Q
    |||||| ||||| || |||||| |||||||||||||||||| || | |||| ||||| |||||||||| ||||||||||||||| |||||||||    
T  4066770 atgccacgtaggattatgatgatgtggacatctttagaggagagaattttggaatagactatttctaaaaactctaaattgttaatataaagat 4066863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 98
Target Start/End: Complemental strand, 23302297 - 23302204
Alignment:
Q  5 atgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 98  Q
    |||||||||||| ||  ||||| ||| |||||||||||||| |||| |||| |||| ||||||||||| |||| ||||||||||||||||||||    
T  23302297 atgccaagtaggattaggatgatgtgaacatctttagaggagaggattttggaataagctatttctaaaaactttaaattgttagtataaagat 23302204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 23302943 - 23302855
Alignment:
Q  5 atgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtata 93  Q
    |||||||||||| ||  ||||| |||||||||||||||||| |||| |||  |||| ||||||||||| ||||||||||||||||||||    
T  23302943 atgccaagtaggattaggatgatgtggacatctttagaggagaggattttagaataagctatttctaaaaactctaaattgttagtata 23302855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 2 - 98
Target Start/End: Original strand, 18784674 - 18784770
Alignment:
Q  2 catatgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 98  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18784674 catatgccaagtaggcttttgatgaggtggacatccttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 18784770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 2 - 98
Target Start/End: Complemental strand, 35113439 - 35113343
Alignment:
Q  2 catatgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 98  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35113439 catatgccaagtaggcttttgatgaggtggacatccttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 35113343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 2 - 98
Target Start/End: Original strand, 37316146 - 37316242
Alignment:
Q  2 catatgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 98  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37316146 catatgccaagtaggcttttgatgaggtggacatccttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 37316242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 2 - 98
Target Start/End: Original strand, 44045614 - 44045710
Alignment:
Q  2 catatgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 98  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44045614 catatgccaagtaggcttttgatgaggtggacatccttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 44045710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 2 - 98
Target Start/End: Complemental strand, 42046681 - 42046585
Alignment:
Q  2 catatgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 98  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  42046681 catatgccaagtaggcttttgatgaggtggacatccttagaggaaaggaatttgaattaggctatttctaagaactctaaattgttagtataaagat 42046585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 2 - 98
Target Start/End: Complemental strand, 35504923 - 35504827
Alignment:
Q  2 catatgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 98  Q
    ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  35504923 catatgccaagtaggattttgatgaggtggacatccttagaggaaaggaatttgaaataggctattgctaagaactctaaattgttagtataaagat 35504827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 5 - 99
Target Start/End: Complemental strand, 42049391 - 42049297
Alignment:
Q  5 atgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagata 99  Q
    ||||||| |||| || |||||| |||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  42049391 atgccaattaggattatgatgatgtggacatctttagaggagaggattttgaaataggctatttctaaaaactctaaattgttagtataaagata 42049297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 5 - 98
Target Start/End: Original strand, 21954234 - 21954327
Alignment:
Q  5 atgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 98  Q
    |||||||||||| || |||||| |||||||||||||||||| |||| |||| |||||||||||||||| |||||||||||||||||||||||||    
T  21954234 atgccaagtaggattatgatgatgtggacatctttagaggagaggattttggaataggctatttctaaaaactctaaattgttagtataaagat 21954327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 5 - 95
Target Start/End: Original strand, 34643876 - 34643966
Alignment:
Q  5 atgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaa 95  Q
    ||||||| |||| || |||||| |||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  34643876 atgccaattaggattatgatgatgtggacatctttagaggagaggattttgaaataggctatttctaaaaactctaaattgttagtataaa 34643966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 5 - 98
Target Start/End: Complemental strand, 46804849 - 46804756
Alignment:
Q  5 atgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 98  Q
    |||||||||| | || |||||| |||||||||||||||||| |||| |||| |||||||||||||||| |||||||||||||||||||||||||    
T  46804849 atgccaagtatgattatgatgatgtggacatctttagaggagaggattttggaataggctatttctaaaaactctaaattgttagtataaagat 46804756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 5 - 102
Target Start/End: Complemental strand, 6612740 - 6612643
Alignment:
Q  5 atgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagataaag 102  Q
    |||||| ||||| || |||||| |||||||||||||||||| || | |||| |||||||||||||||| ||||||||| ||||| |||||||||||||    
T  6612740 atgccacgtaggattatgatgatgtggacatctttagaggagagaattttggaataggctatttctaaaaactctaaagtgttaatataaagataaag 6612643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 98
Target Start/End: Original strand, 47400821 - 47400914
Alignment:
Q  5 atgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 98  Q
    ||||||| |||  ||| ||||| |||||||||||||||||| |||| |||| ||||  |||||||||| |||||||||||||||||||||||||    
T  47400821 atgccaaatagcatttggatgatgtggacatctttagaggagaggattttggaataaactatttctaaaaactctaaattgttagtataaagat 47400914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 99
Target Start/End: Original strand, 19297205 - 19297300
Alignment:
Q  5 atgccaagtaggcttttgatgaggtggacatctttagaggaaaggaat-ttgaaataggctatttctaagaactctaaattgttagtataaagata 99  Q
    ||||||| |||| || ||||||||||||||||||||||||| |||||| ||| ||| |   |||| ||| ||||||||| ||||||||||||||||    
T  19297205 atgccaaataggattatgatgaggtggacatctttagaggagaggaatcttggaatggtgcatttttaaaaactctaaaatgttagtataaagata 19297300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 2 - 98
Target Start/End: Original strand, 22721364 - 22721460
Alignment:
Q  2 catatgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 98  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22721364 catatgccaagtaggcttttgatgaggtggacatccttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 22721460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 2 - 98
Target Start/End: Original strand, 36789747 - 36789843
Alignment:
Q  2 catatgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 98  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36789747 catatgccaagtaggcttttgatgaggtggacatccttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 36789843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 2 - 98
Target Start/End: Complemental strand, 16475668 - 16475572
Alignment:
Q  2 catatgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 98  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  16475668 catatgccaagtaggcttttgatgaggtggacatccttagaggaaaggaatttgaattaggctatttctaagaactctaaattgttagtataaagat 16475572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 2 - 98
Target Start/End: Original strand, 23107591 - 23107687
Alignment:
Q  2 catatgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 98  Q
    |||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  23107591 catatgccaagtaggcttttgatgaggtgggcatccttagaggaaaggaatttgaactaggctatttctaagaactctaaattgttagtataaagat 23107687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 2 - 98
Target Start/End: Complemental strand, 25336147 - 25336051
Alignment:
Q  2 catatgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 98  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  25336147 catatgctaagtaggcttttgatgaggtggacatccttagaggaaaggaatttgaaatagactatttctaagaactctaaattgttagtataaagat 25336051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 2 - 99
Target Start/End: Original strand, 1212738 - 1212835
Alignment:
Q  2 catatgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagata 99  Q
    ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  1212738 catatgccaagtaggtttttgatgaggtggacatccttagaggaaaggaatttgaattaggctatttctaagaactctagattgttagtataaagata 1212835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 2 - 99
Target Start/End: Original strand, 28969608 - 28969705
Alignment:
Q  2 catatgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagata 99  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  28969608 catatgctaagtaggcttttgatgaggtggacatctttagagaaaaggaatttgaattaggctatttctaaaaactctaaattgttagtataaagata 28969705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 5 - 99
Target Start/End: Complemental strand, 16478262 - 16478168
Alignment:
Q  5 atgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagata 99  Q
    ||||||| |||| || |||||| |||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  16478262 atgccaattaggattatgatgatgtggacatctttagaggagaggattttgaaataggctatttctaaaaactctaaattgttagtataaagata 16478168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 5 - 99
Target Start/End: Complemental strand, 40830562 - 40830468
Alignment:
Q  5 atgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagata 99  Q
    |||||||||||| || |||||| |||||||||||||||||| |||| |||| |||||||||||||||| ||||||||||||||||||||||||||    
T  40830562 atgccaagtaggattatgatgatgtggacatctttagaggagaggattttggaataggctatttctaaaaactctaaattgttagtataaagata 40830468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 5 - 99
Target Start/End: Original strand, 39565276 - 39565370
Alignment:
Q  5 atgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagata 99  Q
    |||||| ||||| || |||||| |||||||||||||||||| |||| |||| |||||||||||||||| ||||||||||||||||||||||||||    
T  39565276 atgccacgtaggattatgatgatgtggacatctttagaggagaggattttggaataggctatttctaaaaactctaaattgttagtataaagata 39565370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 5 - 98
Target Start/End: Original strand, 5812597 - 5812690
Alignment:
Q  5 atgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 98  Q
    |||||||||| | || |||||| |||||||||||||||||| |||| |||| |||||||||||||||| |||||||||||||||||||||||||    
T  5812597 atgccaagtatgattatgatgatgtggacatctttagaggagaggattttggaataggctatttctaaaaactctaaattgttagtataaagat 5812690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 98
Target Start/End: Original strand, 1598721 - 1598814
Alignment:
Q  5 atgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 98  Q
    |||||||||| | || |||||| ||||||||| |||||||| |||| |||| |||||||||||||||| |||||||||||||||||||||||||    
T  1598721 atgccaagtatgattatgatgatgtggacatcattagaggagaggattttggaataggctatttctaaaaactctaaattgttagtataaagat 1598814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 5 - 98
Target Start/End: Original strand, 22497021 - 22497114
Alignment:
Q  5 atgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 98  Q
    ||||||| |||| || |||||| ||||||| |||| ||||| |||| |||| |||||||||||||||| |||||||||||||||||||||||||    
T  22497021 atgccaaataggattatgatgatgtggacacctttggaggagaggattttggaataggctatttctaaaaactctaaattgttagtataaagat 22497114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 102
Target Start/End: Original strand, 22386979 - 22387076
Alignment:
Q  5 atgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagataaag 102  Q
    |||||||||||| ||  ||| | |||||  ||||||||||| |||| |||| |||| ||||||||||| |||||||||||||||||||||||||||||    
T  22386979 atgccaagtaggattaggataatgtggatgtctttagaggagaggattttggaataagctatttctaaaaactctaaattgttagtataaagataaag 22387076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 2 - 98
Target Start/End: Complemental strand, 27071113 - 27071017
Alignment:
Q  2 catatgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 98  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27071113 catatgccaagtaggcttttgatgaggtggacatccttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 27071017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 2 - 98
Target Start/End: Complemental strand, 27151199 - 27151103
Alignment:
Q  2 catatgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 98  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27151199 catatgccaagtaggcttttgatgaggtggacatccttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 27151103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 2 - 98
Target Start/End: Complemental strand, 4943270 - 4943174
Alignment:
Q  2 catatgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 98  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  4943270 catatgccaagtaggcttttgatgaggtggacatccttagaggaaaggaatttgaattaggctatttctaagaactctaaattgttagtataaagat 4943174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 2 - 99
Target Start/End: Complemental strand, 7509545 - 7509448
Alignment:
Q  2 catatgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagata 99  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  7509545 catatgccaagtaggcttttgatgaggtggacatccttaaaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagata 7509448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 2 - 98
Target Start/End: Original strand, 9768655 - 9768751
Alignment:
Q  2 catatgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 98  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  9768655 catatgccaagtaggtttttgatgaggtggacatccttagaggaaaggaatttgaaatagattatttctaagaactctaaattgttagtataaagat 9768751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 5 - 99
Target Start/End: Complemental strand, 5943949 - 5943855
Alignment:
Q  5 atgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagata 99  Q
    ||||||| |||| || |||||| |||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  5943949 atgccaattaggattatgatgatgtggacatctttagaggagaggattttgaaataggctatttctaaaaactctaaattgttagtataaagata 5943855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 38 - 99
Target Start/End: Original strand, 6243528 - 6243589
Alignment:
Q  38 ttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagata 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6243528 ttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagata 6243589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 5 - 98
Target Start/End: Complemental strand, 48426019 - 48425926
Alignment:
Q  5 atgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 98  Q
    |||||| ||||| || | |||| |||||||||||||||||| || | ||||||||||||||||||||| ||||||||||||||| |||||||||    
T  48426019 atgccacgtaggattattatgatgtggacatctttagaggagagaattttgaaataggctatttctaaaaactctaaattgttaatataaagat 48425926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 83
Target Start/End: Complemental strand, 34802137 - 34802059
Alignment:
Q  5 atgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaat 83  Q
    |||||||||||| || |||||| |||||||||||||||||| |||| |||| |||||||||||||||| ||||||||||    
T  34802137 atgccaagtaggattatgatgatgtggacatctttagaggagaggattttggaataggctatttctaaaaactctaaat 34802059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 98
Target Start/End: Complemental strand, 25887491 - 25887402
Alignment:
Q  9 caagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 98  Q
    |||||||| ||  ||||| |||||||||||||||||| |||| |||| ||||  |||||||||| |||||||||||||||||||||||||    
T  25887491 caagtaggattaggatgatgtggacatctttagaggagaggattttggaataaactatttctaaaaactctaaattgttagtataaagat 25887402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 32 - 98
Target Start/End: Original strand, 36353293 - 36353359
Alignment:
Q  32 acatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 98  Q
    ||||||||||| || || | ||||||||||||||||| ||| |||||||||||||||||||||||||    
T  36353293 acatctttagatgagagaattttgaaataggctatttttaaaaactctaaattgttagtataaagat 36353359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 99
Target Start/End: Original strand, 27024597 - 27024675
Alignment:
Q  21 tgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagata 99  Q
    |||||| || ||||| |||| |||| |||| |||  |||||||||||||||| ||||||||||||||||||| ||||||    
T  27024597 tgatgatgtagacatatttaaaggagaggattttagaataggctatttctaaaaactctaaattgttagtatgaagata 27024675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 89
Target Start/End: Complemental strand, 48945208 - 48945124
Alignment:
Q  5 atgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttag 89  Q
    ||||||| |||| || |||||| ||||||||||||| |||| || | |||  ||||| |||||||||| ||||||||||||||||    
T  48945208 atgccaaataggattatgatgatgtggacatctttaaaggagagaattttagaatagactatttctaaaaactctaaattgttag 48945124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 2 - 98
Target Start/End: Original strand, 12256718 - 12256814
Alignment:
Q  2 catatgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 98  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12256718 catatgccaagtaggcttttgatgaggtggacatccttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 12256814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 2 - 98
Target Start/End: Original strand, 42843080 - 42843176
Alignment:
Q  2 catatgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 98  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42843080 catatgccaagtaggcttttgatgaggtggacatccttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 42843176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 5 - 99
Target Start/End: Complemental strand, 40263509 - 40263415
Alignment:
Q  5 atgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagata 99  Q
    |||||||||||| || |||||| |||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  40263509 atgccaagtaggattatgatgatgtggacatctttagaggagaggattttgaaataggctatttctaaaaactctaaattgttattataaagata 40263415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 5 - 100
Target Start/End: Original strand, 4651507 - 4651602
Alignment:
Q  5 atgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagataa 100  Q
    |||||||||||| || |||||| |||||||||||||||||| |||| |||||||||| || ||||||| |||||||||||||||||||||||||||    
T  4651507 atgccaagtaggattatgatgatgtggacatctttagaggagaggattttgaaatagactgtttctaaaaactctaaattgttagtataaagataa 4651602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 5 - 98
Target Start/End: Original strand, 3555042 - 3555135
Alignment:
Q  5 atgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 98  Q
    |||||||||||| ||  ||||| |||||||||||||||||| |||| ||||||||| ||||||||||| |||||||||||||||||||||||||    
T  3555042 atgccaagtaggattaggatgatgtggacatctttagaggagaggattttgaaataagctatttctaaaaactctaaattgttagtataaagat 3555135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 5 - 98
Target Start/End: Complemental strand, 6904378 - 6904285
Alignment:
Q  5 atgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 98  Q
    |||||||||||| || ||| || |||||||||||||||||| || | |||  |||||||||||||||| |||||||||||||||||||||||||    
T  6904378 atgccaagtaggattatgaagatgtggacatctttagaggagagaattttagaataggctatttctaaaaactctaaattgttagtataaagat 6904285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 39122562 - 39122619
Alignment:
Q  2 catatgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaat 59  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  39122562 catatgccaagtaggcttttgatgaggtggacattcttagaggaaaggaatttgaaat 39122619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 102
Target Start/End: Original strand, 4720930 - 4721023
Alignment:
Q  9 caagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagataaag 102  Q
    |||||||| || | |||| |||||||||||||||||| || | |||  |||| ||||||||||| ||||||||||| |||||||||||||||||    
T  4720930 caagtaggattataatgatgtggacatctttagaggagagaattttagaataagctatttctaaaaactctaaattcttagtataaagataaag 4721023  T

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Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 98
Target Start/End: Complemental strand, 42224141 - 42224050
Alignment:
Q  5 atgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 98  Q
    |||||||||||| ||  ||||| ||||||||||||| | ||  |||||||| |||| ||||||||||| |||| ||||||||||||||||||||    
T  42224141 atgccaagtaggattaggatgatgtggacatctttaaaaga--ggaatttggaataagctatttctaaaaactttaaattgttagtataaagat 42224050  T

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Target: chr1 (Bit Score: 89; Significance: 5e-43; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 2 - 98
Target Start/End: Complemental strand, 13496618 - 13496522
Alignment:
Q  2 catatgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 98  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  13496618 catatgccaagtaggcttttgatgaggtggacatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 13496522  T

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Target: chr1; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 2 - 98
Target Start/End: Complemental strand, 42435747 - 42435651
Alignment:
Q  2 catatgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 98  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  42435747 catatgccaagtaggcttttgatgaggtggacatccttagaggaaaggaatttgaattaggctatttctaagaactctaaattgttagtataaagat 42435651  T

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Target: chr1; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 2 - 99
Target Start/End: Complemental strand, 32049840 - 32049743
Alignment:
Q  2 catatgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagata 99  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  32049840 catatgccaagtaggcttttgatgaggtggacatccttagaggaaatgaatttaaaataggctatttctaagaactctaaattgttagtataaagata 32049743  T

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Target: chr1; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 2 - 99
Target Start/End: Original strand, 24455371 - 24455468
Alignment:
Q  2 catatgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagata 99  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  24455371 catatgccaagtaggtttttgatgaggtggacatccttagaggaaaggaatttgaaatagattatttctaagaactctaaattgttagtataaagata 24455468  T

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Target: chr1; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 5 - 102
Target Start/End: Complemental strand, 45536959 - 45536862
Alignment:
Q  5 atgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagataaag 102  Q
    |||||||||||| || |||||| ||||||||||||||||||||| | |||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  45536959 atgccaagtaggattatgatgatgtggacatctttagaggaaagaattttggaataggctatttctaaaaactctaaattgttagtataaagataaag 45536862  T

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Target: chr1; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 5 - 100
Target Start/End: Complemental strand, 24775538 - 24775443
Alignment:
Q  5 atgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagataa 100  Q
    |||||||||||| || |||||| |||||||||||||||||| |||| |||| |||||||||||||||| |||||||||||||||||||||||||||    
T  24775538 atgccaagtaggattatgatgatgtggacatctttagaggagaggattttggaataggctatttctaaaaactctaaattgttagtataaagataa 24775443  T

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Target: chr1; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 5 - 99
Target Start/End: Complemental strand, 2023132 - 2023038
Alignment:
Q  5 atgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagata 99  Q
    |||||||||||| || |||||| |||||||||||||||||| |||| |||| |||||||||||||||| ||||||||||||||||||||||||||    
T  2023132 atgccaagtaggattatgatgatgtggacatctttagaggagaggattttggaataggctatttctaaaaactctaaattgttagtataaagata 2023038  T

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Target: chr1; HSP #8
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 5 - 99
Target Start/End: Original strand, 38984614 - 38984708
Alignment:
Q  5 atgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagata 99  Q
    |||||||||||| || |||||| |||||||||||||||||| |||| ||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  38984614 atgccaagtaggattatgatgatgtggacatctttagaggagaggattttgaaataggctgtttctaaaaactctaaattgttagtataaagata 38984708  T

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Target: chr1; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 5 - 98
Target Start/End: Complemental strand, 18410310 - 18410217
Alignment:
Q  5 atgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 98  Q
    ||||||| |||| || |||||| ||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||||    
T  18410310 atgccaattaggattatgatgatgtggacatctttagaggaaaggattttgaaatagactatttctaaaaactctaaattgttagtataaagat 18410217  T

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Target: chr1; HSP #10
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 5 - 98
Target Start/End: Original strand, 21332915 - 21333008
Alignment:
Q  5 atgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 98  Q
    |||||||||||| || |||||| |||||||||||||||||| |||| |||| ||| |||||||||||| |||||||||||||||||||||||||    
T  21332915 atgccaagtaggattatgatgatgtggacatctttagaggagaggattttggaatgggctatttctaaaaactctaaattgttagtataaagat 21333008  T

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Target: chr1; HSP #11
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 5 - 98
Target Start/End: Original strand, 28645847 - 28645940
Alignment:
Q  5 atgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 98  Q
    |||||||||| | || |||||| |||||||||||||||||| |||| |||| |||||||||||||||| |||||||||||||||||||||||||    
T  28645847 atgccaagtatgattatgatgatgtggacatctttagaggagaggattttggaataggctatttctaaaaactctaaattgttagtataaagat 28645940  T

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Target: chr1; HSP #12
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 5 - 98
Target Start/End: Original strand, 32524042 - 32524135
Alignment:
Q  5 atgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 98  Q
    ||||||| |||| || |||||| |||||||||||||||||| |||| ||| ||||||||||||||||| |||||||||||||||||||||||||    
T  32524042 atgccaattaggattatgatgatgtggacatctttagaggagaggattttaaaataggctatttctaaaaactctaaattgttagtataaagat 32524135  T

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Target: chr1; HSP #13
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 5 - 98
Target Start/End: Original strand, 43643239 - 43643332
Alignment:
Q  5 atgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 98  Q
    ||||||||| || || |||||| |||||||||||||||||| |||| |||| |||||||||||||||| |||||||||||||||||||||||||    
T  43643239 atgccaagtgggattatgatgatgtggacatctttagaggagaggattttggaataggctatttctaaaaactctaaattgttagtataaagat 43643332  T

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Target: chr1; HSP #14
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 21 - 99
Target Start/End: Complemental strand, 49004951 - 49004873
Alignment:
Q  21 tgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagata 99  Q
    |||||| |||||| |||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||    
T  49004951 tgatgatgtggacgtctttagaggaaaggattttggaataggctatttctaaaaactctaaattgttagtataaagata 49004873  T

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Target: chr1; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 102
Target Start/End: Complemental strand, 20274495 - 20274398
Alignment:
Q  5 atgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagataaag 102  Q
    |||||||||||| ||  |||||  ||||||||||||||| |||||| |||| |||| ||||||||||| |||||||||||||||||||||||||||||    
T  20274495 atgccaagtaggattaggatgatatggacatctttagagtaaaggattttggaataagctatttctaaaaactctaaattgttagtataaagataaag 20274398  T

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Target: chr1; HSP #16
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 5 - 98
Target Start/End: Original strand, 42829924 - 42830017
Alignment:
Q  5 atgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 98  Q
    |||||||||||| || ||| || |||||||||||||||||| || | |||  |||||||||||||||| |||||||||||||||||||||||||    
T  42829924 atgccaagtaggattatgaagatgtggacatctttagaggagagaattttagaataggctatttctaaaaactctaaattgttagtataaagat 42830017  T

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Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 40 - 98
Target Start/End: Complemental strand, 2840409 - 2840351
Alignment:
Q  40 agaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 98  Q
    |||||| |||| |||| |||||||| ||||||| |||||||||||||||||||||||||    
T  2840409 agaggagaggattttggaataggctgtttctaaaaactctaaattgttagtataaagat 2840351  T

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Target: scaffold0088 (Bit Score: 62; Significance: 7e-27; HSPs: 4)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 5 - 98
Target Start/End: Complemental strand, 10736 - 10643
Alignment:
Q  5 atgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 98  Q
    |||||||||||| || || ||| ||||||||||||| |||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  10736 atgccaagtaggattatgctgatgtggacatctttaaaggagaggattttgaaataggctatttctaaaaactctaaattgttagtataaagat 10643  T

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Target: scaffold0088; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 89
Target Start/End: Original strand, 1330 - 1414
Alignment:
Q  5 atgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttag 89  Q
    |||||||||||| || |||||| || ||||||||||||||| |||| |||  |||||||||||||||| || ||| |||||||||    
T  1330 atgccaagtaggattatgatgatgtagacatctttagaggagaggattttagaataggctatttctaaaaagtcttaattgttag 1414  T

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Target: scaffold0088; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 8724 - 8804
Alignment:
Q  9 caagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttag 89  Q
    |||||||| || |||||| || ||||||||||||||| |||| |||  |||| ||||||||||| || ||| |||||||||    
T  8724 caagtaggattatgatgatgtagacatctttagaggagaggattttagaataagctatttctaaaaagtcttaattgttag 8804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 25219 - 25299
Alignment:
Q  9 caagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttag 89  Q
    |||||||| || |||||| || ||||||||||||||| |||| |||  |||| ||||||||||| || ||| |||||||||    
T  25219 caagtaggattatgatgatgtagacatctttagaggagaggattttagaataagctatttctaaaaagtcttaattgttag 25299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 5 - 98
Target Start/End: Original strand, 198967 - 199060
Alignment:
Q  5 atgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 98  Q
    ||||||| |||| || |||||| |||||||||||||||||| |||| ||| ||||||||||||||||| |||||||||||||||||||||||||    
T  198967 atgccaattaggattatgatgatgtggacatctttagaggagaggatttttaaataggctatttctaaaaactctaaattgttagtataaagat 199060  T

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Target: scaffold0368 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0368
Description:

Target: scaffold0368; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 5 - 98
Target Start/End: Original strand, 9980 - 10073
Alignment:
Q  5 atgccaagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 98  Q
    |||||||||||| || ||| || |||||||||||||||||| || | |||  |||||||||||||||| |||||||||||||||||||||||||    
T  9980 atgccaagtaggattatgaagatgtggacatctttagaggagagaattttagaataggctatttctaaaaactctaaattgttagtataaagat 10073  T

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Target: scaffold1289 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1289
Description:

Target: scaffold1289; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 335 - 255
Alignment:
Q  9 caagtaggcttttgatgaggtggacatctttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttag 89  Q
    |||||||| || |||||| || ||||||||||||||| |||| |||  |||| ||||||||||| || ||| |||||||||    
T  335 caagtaggattatgatgatgtagacatctttagaggagaggattttagaataagctatttctaaaaagtcttaattgttag 255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0781 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0781
Description:

Target: scaffold0781; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 232
Target Start/End: Original strand, 3514 - 3554
Alignment:
Q  192 gaaataatgaaagaagctggcgattatttcaaactggtaat 232  Q
    |||||||||||||||| |||||||| ||||||||| |||||    
T  3514 gaaataatgaaagaagttggcgattctttcaaacttgtaat 3554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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