View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14758_low_39 (Length: 243)
Name: NF14758_low_39
Description: NF14758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14758_low_39 |
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| [»] scaffold0291 (2 HSPs) |
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Alignment Details
Target: scaffold0291 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: scaffold0291
Description:
Target: scaffold0291; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 5658 - 5435
Alignment:
| Q |
1 |
tgtcttaaaactgtaacagatcatttaaaatgttatgatatatatgcatgagaaattcttagatgggaacgtaagtaacatatcagtatttacaaacaac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
5658 |
tgtcttaaaactgtaacagatcatttaaaatgttatgatatatatacatgagaaattcttagatgggaacgtaagtaacatatcatcatttataaacaac |
5559 |
T |
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| Q |
101 |
caataaaaatattataactcatttaatttattnnnnnnntagagaataaaataaagatggaacttgtcatccgtattgcttgctattcttccgccattat |
200 |
Q |
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| T |
5558 |
caataaaaatattacacctcatttaatttattaaaaaaatagagaataaaataaagatgaaacttgtcttccgtattgcttgctattcttccaccattat |
5459 |
T |
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| Q |
201 |
tttgagcaagcaaaatggaggaca |
224 |
Q |
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||||||||||||||| |||||||| |
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| T |
5458 |
tttgagcaagcaaaacggaggaca |
5435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0291; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 52 - 184
Target Start/End: Original strand, 5322 - 5454
Alignment:
| Q |
52 |
gaaattcttagatgggaacgtaagtaacatatcagtatttacaaacaaccaataaaaatattataactcatttaatttattnnnnnnntagagaataaaa |
151 |
Q |
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| T |
5322 |
gaaattcttggatgggaacgtaagtaacatgtcagcatttacaaacaaccaatcaaaacattacacctcatttaatttattaaaaaaatagagaataaaa |
5421 |
T |
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| Q |
152 |
taaagatggaacttgtcatccgtattgcttgct |
184 |
Q |
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| T |
5422 |
taaagttgaaacgtgtcctccgttttgcttgct |
5454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 53 - 206
Target Start/End: Complemental strand, 40974687 - 40974537
Alignment:
| Q |
53 |
aaattcttagatgggaacgtaagtaacatatcagtatttacaaacaaccaataaaaatattataactcatttaatttattnnnnnnntagagaataaaat |
152 |
Q |
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| T |
40974687 |
aaattcttggatgggaacgtaagtaacatgtcagcatttacaaacaaccaataaaaagattacacctcatttaatttattaaaaaaatagagaataaaat |
40974588 |
T |
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| Q |
153 |
aaagatggaacttgtcatccgtattgcttgctattcttccgccattattttgag |
206 |
Q |
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| T |
40974587 |
aaagatgaaacgtgtcctccgttttgcttgc---tcttccgccattattttgag |
40974537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 49 - 206
Target Start/End: Original strand, 40973076 - 40973235
Alignment:
| Q |
49 |
tgagaaattcttagatgggaacgtaagtaacatatcagtatttacaaacaaccaataaaaatattataactcatttaatttatt--nnnnnnntagagaa |
146 |
Q |
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| T |
40973076 |
tgagaaattcttagattggaacgtaagtaacatgtcagcatttacaaacgatcaataaaaacattaaacctcatttaatttattaaaaaaatatataaaa |
40973175 |
T |
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| Q |
147 |
taaaataaagatggaacttgtcatccgtattgcttgctattcttccgccattattttgag |
206 |
Q |
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| T |
40973176 |
aaaaataaagatgaaacttgtcctccgtattgcttgctattcttccgccattattttgag |
40973235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 50 - 203
Target Start/End: Original strand, 21704112 - 21704264
Alignment:
| Q |
50 |
gagaaattcttagatgggaacgtaagtaacatatcagtatttacaaacaaccaataaaaatattataactcatttaatttattnnnnnnntagagaataa |
149 |
Q |
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|||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||| |||| | ||||||||||||||| || | ||||| |
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| T |
21704112 |
gagaaattcttagatgggaatgtaagtaacatgtcagtatttacaaacaaccaat-aaaacattacacctcatttaatttattaaaaaaataaaaaataa |
21704210 |
T |
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| Q |
150 |
aataaagatggaacttgtcatccgtattgcttgctattcttccgccattatttt |
203 |
Q |
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| T |
21704211 |
aataaagatgaaacatgtcctccttattgcttgctcttcttccgccattatttt |
21704264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 50 - 203
Target Start/End: Original strand, 35049555 - 35049709
Alignment:
| Q |
50 |
gagaaattcttagatgggaacgtaagtaacatatcagtatttacaaacaaccaataaaaatattataactcatttaatttattnnnnnnntagagaa-ta |
148 |
Q |
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| T |
35049555 |
gagaaattcttagatggaaacgtaactaacatgtcagcatttacaaacaataaataaaaattttacacctcatttaatttattaaaaaaataaaaaatta |
35049654 |
T |
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| Q |
149 |
aaataaagatggaacttgtcatccgtattgcttgctattcttccgccattatttt |
203 |
Q |
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| T |
35049655 |
aaataatgatgaaacttgtcctccatattgcttgctcttcttccaccattatttt |
35049709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 50 - 132
Target Start/End: Complemental strand, 35050229 - 35050147
Alignment:
| Q |
50 |
gagaaattcttagatgggaacgtaagtaacatatcagtatttacaaacaaccaataaaaatattataactcatttaatttatt |
132 |
Q |
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||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||| |||| | |||| |||||||||| |
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| T |
35050229 |
gagaaattcttagatgggaacgtaactaacatgtcaggatttacaaacaaccaataaaaacattacacctcaattaatttatt |
35050147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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