View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14758_low_4 (Length: 547)
Name: NF14758_low_4
Description: NF14758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14758_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-135; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 231 - 536
Target Start/End: Original strand, 32425982 - 32426288
Alignment:
| Q |
231 |
ggtttattcgaaagttaagtgtcatagtttattaaaacagaattgtctgatatacttcattaagtataatagtttattagtnnnnnnntatatttatctg |
330 |
Q |
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| T |
32425982 |
ggtttattcgaaagttaagtgtcatagtttattaaaacagaattgtctgatatacttcattaagtatcatagtttattagtaaaaaaatatatttatctg |
32426081 |
T |
|
| Q |
331 |
atacacttcagttgaatagtcgtgagaaatttataatcatcatctttgtgatttgtctcacggaatgtctaactgtcaaccattattaattccattttct |
430 |
Q |
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| T |
32426082 |
atacacttcagttgaatagtcgtgagaaatttataatcatcatctttgtgatttgtcttacggaatgtctaactgtcaaccatgattaattccattttct |
32426181 |
T |
|
| Q |
431 |
taactgaaagtgtaaacaaaattttc-nnnnnnntgtgtacagatcatggtcgttgattaatatgaaagagattcaaagtttgatcccgacaattaacac |
529 |
Q |
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| T |
32426182 |
taactgaaagtgtaaacaaaattttcaaaaaaaatgtgtacagatcatggtcgttgattaatatgaaagagattcaaagtttgatcccgacaattaacac |
32426281 |
T |
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| Q |
530 |
aggttct |
536 |
Q |
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||||||| |
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| T |
32426282 |
aggttct |
32426288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 20 - 215
Target Start/End: Original strand, 32425800 - 32425995
Alignment:
| Q |
20 |
ccagacaaattcttttggccaatgtagataaaatattgaattacgtccgagacatgcaggatttatattatgtttaccaagtaatgagattttattgtga |
119 |
Q |
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| T |
32425800 |
ccagacaaattcttttggccaatgtagataaaatattgaattacgtccgagacatgcaggatttatattatgtttaccaagtaatgagattttattgtga |
32425899 |
T |
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| Q |
120 |
tcttgtgtttagtttcccttcttcctaatgaatttgcttttcgggtattgaagttcacatttgtgaagttcattgttttgatggtttattcgaaag |
215 |
Q |
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| T |
32425900 |
tcttgtgtctagtttcccttcttcctaatgaatttgcgtttcgggtattgaagttcacatttgtgaagttcattgttttgatggtttattcgaaag |
32425995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 231 - 398
Target Start/End: Original strand, 1544180 - 1544349
Alignment:
| Q |
231 |
ggtttattcgaaagttaagtgtcatagtttattaaaacagaattgtctgatatacttcattaagtataatagtttattagtnnnnnnntatatttatctg |
330 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||| |||||||||||| |||||||||||| |
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| T |
1544180 |
ggtttattcgaaagttaagtgtca--gtttattaaaacaaaattgtctgatacacttcattaagtatcgtagtttattagt-aaaaaatatatttatctg |
1544276 |
T |
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| Q |
331 |
atacacttcagttgaatagtcgtgagaaatttataatc-----atcatctttgtgatttgtctcacggaatgt |
398 |
Q |
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| T |
1544277 |
acacacttaagccgaatagtcgtgagaaattcatgatcatgatatgatctttgtgatttgtcttactgaatgt |
1544349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 99 - 215
Target Start/End: Original strand, 1544078 - 1544193
Alignment:
| Q |
99 |
agtaatgagattttattgtgatcttgtgtttagtttcccttcttcctaatgaatttgcttttcgggtattgaagttcac-atttgtgaagttcattgttt |
197 |
Q |
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| T |
1544078 |
agtaatgagattttatag--atcttaggtctagtttcccttcttcataatgaatttgtgtttcgggtattgaagtttacaatttttgaagttcattattt |
1544175 |
T |
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| Q |
198 |
tgatggtttattcgaaag |
215 |
Q |
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| T |
1544176 |
tgatggtttattcgaaag |
1544193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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