View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14758_low_42 (Length: 238)
Name: NF14758_low_42
Description: NF14758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14758_low_42 |
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Alignment Details
Target: chr8 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 8 - 222
Target Start/End: Complemental strand, 13861525 - 13861309
Alignment:
| Q |
8 |
cgcaccagcgacaatgtatccctcctttattcaaaatcatt-ttttctatgactaattcacannnnnnnctaacttatagattatattttatatatttat |
106 |
Q |
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| T |
13861525 |
cgcaccagcgacaatatatccctcctctattcaaaatcattcttttatatgactaattcacattgttttctaacttatagatgaaattttatatatttat |
13861426 |
T |
|
| Q |
107 |
tctgaatttcttataaaattgtagttaatagcataaaaaggaatcaaatgaatttgaatggtggagctgagc-agaaaaaagaggtaatggggttcaaaa |
205 |
Q |
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|||||||||||||||||||||| |||| |||||||| |||| |||||||| ||||||||||| ||||||| | |||||||||||| | |||||||||| |
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| T |
13861425 |
tctgaatttcttataaaattgttattaacagcataaagtggaaccaaatgaagttgaatggtggggctgagcaacaaaaaagaggtacttgggttcaaaa |
13861326 |
T |
|
| Q |
206 |
ccaggaagtggttgagc |
222 |
Q |
| |
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|||||||| |||||||| |
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| T |
13861325 |
ccaggaagcggttgagc |
13861309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 8 - 222
Target Start/End: Complemental strand, 52526821 - 52526605
Alignment:
| Q |
8 |
cgcaccagcgacaatgtatccctcctttattcaaaatcattttttc-tatgactaattcacannnnnnnctaacttatagattatattttatatatttat |
106 |
Q |
| |
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||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||| | ||||||||||||||| |
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| T |
52526821 |
cgcaccagcgacaatatatccctcctctattcaaaatcatttttttatatgactaattcacattgttttctaacttatagatgaaattttatatatttat |
52526722 |
T |
|
| Q |
107 |
tctgaatttcttataaaattgtagttaatagcataaaaaggaatcaaatgaatttgaatggtggagctgagc-agaaaaaagaggtaatggggttcaaaa |
205 |
Q |
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|||||||||||||||||||||| |||| |||||||| |||| |||||||| ||||||||||| ||||||| | |||||||||||| | |||||||||| |
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| T |
52526721 |
tctgaatttcttataaaattgttattaacagcataaagtggaaccaaatgaagttgaatggtggggctgagcaacaaaaaagaggtacttgggttcaaaa |
52526622 |
T |
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| Q |
206 |
ccaggaagtggttgagc |
222 |
Q |
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|||||||| |||||||| |
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| T |
52526621 |
ccaggaagcggttgagc |
52526605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 8 - 222
Target Start/End: Original strand, 26451820 - 26452036
Alignment:
| Q |
8 |
cgcaccagcgacaatgtatccctcctttattcaaaatcattttttc-tatgactaattcacannnnnnnctaacttatagattatattttatatatttat |
106 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||||||| |||| ||||||||||||||| |||||||| |||| | ||||||||||||||| |
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| T |
26451820 |
cgcaccagcgacaatatatccctcctctattcaaaatcattctttcatatgactaattcacattgttttctaacttaaagatgaaattttatatatttat |
26451919 |
T |
|
| Q |
107 |
tctgaatttcttataaaattgtagttaatagcataaaaaggaatcaaatgaatttgaatggtggagctgagcag-aaaaaagaggtaatggggttcaaaa |
205 |
Q |
| |
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||||||||| |||||||||||| |||| |||||||| ||||||||||||| |||||||| || ||||||||| |||| ||||||||| ||||| |||| |
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| T |
26451920 |
tctgaatttgttataaaattgttattaacagcataaagtggaatcaaatgaagttgaatggcggggctgagcagcaaaagagaggtaattgggttgaaaa |
26452019 |
T |
|
| Q |
206 |
ccaggaagtggttgagc |
222 |
Q |
| |
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|||||||| |||||||| |
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| T |
26452020 |
ccaggaagcggttgagc |
26452036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 12 - 167
Target Start/End: Complemental strand, 41864971 - 41864813
Alignment:
| Q |
12 |
ccagcgacaatgtatccctcctttattcaaaatcattttt--tctatgactaattcacannnnnnnctaacttatagattatattttatatatttattct |
109 |
Q |
| |
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|||||||||||||||| || || |||||||||| ||||| |||||||||||||| || ||||||||| ||| | |||||||||||||||||| |
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| T |
41864971 |
ccagcgacaatgtatctctgctccattcaaaatcgtttttgttctatgactaattcccactgtgttctaacttattgatgagattttatatatttattct |
41864872 |
T |
|
| Q |
110 |
gaatttcttat-aaaattgtagttaatagcataaaaaggaatcaaatgaatttgaatgg |
167 |
Q |
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|| ||| || | |||||||| ||||||||||||| |||| |||||||| |||||||| |
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|
| T |
41864871 |
gattttttttttaaaattgttattaatagcataaagtggaaacaaatgaagttgaatgg |
41864813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 68
Target Start/End: Original strand, 21786522 - 21786576
Alignment:
| Q |
15 |
gcgacaatgtatccctcctttattcaaaatcatt-ttttctatgactaattcaca |
68 |
Q |
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|||||||||||||| |||| |||||||||| ||| ||| |||||||||||||||| |
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| T |
21786522 |
gcgacaatgtatccatcctctattcaaaataattatttgctatgactaattcaca |
21786576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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