View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14758_low_43 (Length: 238)
Name: NF14758_low_43
Description: NF14758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14758_low_43 |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 224
Target Start/End: Original strand, 1885877 - 1886082
Alignment:
| Q |
18 |
aatcgcccaatgttggcagctgctgggtctttgttaagacataactgttgcgattttgaatccaggtgatatctcctctattatttttgcaattctgcat |
117 |
Q |
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| T |
1885877 |
aatcgcccaatgttggcagctgctgggtctttgttaagacataactgttgcgattttgaatccaggtgatatctcctctat-atttttgcaattctgcat |
1885975 |
T |
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| Q |
118 |
cgtttagagccctcacaacagccaatctttagcacgctgatgtggatcatttgaaaaaatagaaataatatggaatgatacctcagacaagtgtcaggtt |
217 |
Q |
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| T |
1885976 |
cgtttagagccctcacaacagccaatctttagcacgctgatgtggatcatttgaaaaaatagaaataatatggaatgatacctcagacaagtgtcaggtt |
1886075 |
T |
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| Q |
218 |
atctgtg |
224 |
Q |
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||||||| |
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| T |
1886076 |
atctgtg |
1886082 |
T |
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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 187
Target Start/End: Original strand, 36256769 - 36256820
Alignment:
| Q |
136 |
cagccaatctttagcacgctgatgtggatcatttgaaaaaatagaaataata |
187 |
Q |
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| T |
36256769 |
cagccaatctttagcacacttatgttgagcatttggaaaaatagaaataata |
36256820 |
T |
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