View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14758_low_44 (Length: 238)
Name: NF14758_low_44
Description: NF14758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14758_low_44 |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 7 - 223
Target Start/End: Original strand, 12498317 - 12498533
Alignment:
| Q |
7 |
atgatgcaggattttatagcagtaatagaaaaaagcatggaaaagtcccatatgatatgatgtatttcataaggcacaaagagaaaataatagaaaagtc |
106 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12498317 |
atgatgcaggattttataccagtaatagaaaaaagcatggaaaagtctcgtatgatatgatgtatttcataaggcacaaagagaaaataatagaaaagtc |
12498416 |
T |
|
| Q |
107 |
caacgtgacgaactttatcatctatctagatgagtctgtagagtaggaaagacatttgagtttaacaagatatacagtactgatgcaaatattggacatg |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
12498417 |
caacgtgacgaactttatcatctatctagatgagtctgtagagtaggaaagacatttgagtttaacaagatatgcagtactgatgcaaatattggacatg |
12498516 |
T |
|
| Q |
207 |
ataccgacattcatatg |
223 |
Q |
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||||||||||| ||||| |
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| T |
12498517 |
ataccgacatttatatg |
12498533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 7 - 223
Target Start/End: Original strand, 12522153 - 12522369
Alignment:
| Q |
7 |
atgatgcaggattttatagcagtaatagaaaaaagcatggaaaagtcccatatgatatgatgtatttcataaggcacaaagagaaaataatagaaaagtc |
106 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12522153 |
atgatgcaggattttatatcagtaatagaaaaaagcatggaaaagtcccttatgatatgatgtatttcataaggcacaaagagaaaataatagaaaagtc |
12522252 |
T |
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| Q |
107 |
caacgtgacgaactttatcatctatctagatgagtctgtagagtaggaaagacatttgagtttaacaagatatacagtactgatgcaaatattggacatg |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||| |||||||||||||||| ||| |
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| T |
12522253 |
caacgtgacgaactttatcatctatctagatgagtctgtagagtaggaaagacatttgagtgtagcaagatatgcagtattgatgcaaatattggatatg |
12522352 |
T |
|
| Q |
207 |
ataccgacattcatatg |
223 |
Q |
| |
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||||||||||||||||| |
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|
| T |
12522353 |
ataccgacattcatatg |
12522369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 7 - 223
Target Start/End: Original strand, 12582416 - 12582631
Alignment:
| Q |
7 |
atgatgcaggattttatagcagtaatagaaaaaagcatggaaaagtcccatatgatatgatgtatttcataaggcacaaagagaaaataatagaaaagtc |
106 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||| ||||||| |||||||| |
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| T |
12582416 |
atgatgcaggatttcataccagtaatagaaaaaagcatcgaaaagtcct-tatgatatgatgtatttcataatgcacaaagagcaaataattgaaaagtc |
12582514 |
T |
|
| Q |
107 |
caacgtgacgaactttatcatctatctagatgagtctgtagagtaggaaagacatttgagtttaacaagatatacagtactgatgcaaatattggacatg |
206 |
Q |
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||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||| || ||| |||| |||||||||||| |
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| T |
12582515 |
caacgtgacaaactttattatctatccagatgagtctgtagagtaggaaagacatttgagtttagcaagatatgcaatacgagtgcagatattggacatg |
12582614 |
T |
|
| Q |
207 |
ataccgacattcatatg |
223 |
Q |
| |
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||||||||||||||||| |
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|
| T |
12582615 |
ataccgacattcatatg |
12582631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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