View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14758_low_45 (Length: 236)
Name: NF14758_low_45
Description: NF14758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14758_low_45 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 49169666 - 49169445
Alignment:
| Q |
1 |
cacttatcatcgtcaaagatttcggttgctatatatgcagctcatgcttcttgtataattacatcaaggaataaaaatggctatatgccacgtatataag |
100 |
Q |
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| T |
49169666 |
cacttatcatcgtcacagatttcggttgctatatatgtagctcatgctttttgtataattacatcaaggaataaaaatggctatatgccacgtatataag |
49169567 |
T |
|
| Q |
101 |
atgaggttgatgctacaaggttgtaggagttaaagtgcttcaaactgatgatgctaaca-aaaatatcaatactagtactaatgaattaatatgcttgtc |
199 |
Q |
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| T |
49169566 |
atgaggttgatgctacaaggttgtatgagttaaagtgcttcaaactgatgatgctaacaaaaaatatcaatactagtactaatgaattaatatgcttgtc |
49169467 |
T |
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| Q |
200 |
atcaataagaaactatattttg |
221 |
Q |
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| T |
49169466 |
atcaataagaaactatattttg |
49169445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 213
Target Start/End: Original strand, 15808612 - 15808675
Alignment:
| Q |
152 |
tgctaacaaaaat--atcaatactagtactaatgaattaatatgcttgtcatcaataagaaact |
213 |
Q |
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| T |
15808612 |
tgctaacaaaaattgatcaatacttgttctattgaattgatatgcttgtcatcaataggaaact |
15808675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 213
Target Start/End: Original strand, 15832009 - 15832057
Alignment:
| Q |
165 |
atcaatactagtactaatgaattaatatgcttgtcatcaataagaaact |
213 |
Q |
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| T |
15832009 |
atcaatacttgttctattgaattgatatgcttgtcatcaataggaaact |
15832057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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