View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14758_low_6 (Length: 495)
Name: NF14758_low_6
Description: NF14758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14758_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 1 - 480
Target Start/End: Complemental strand, 21589916 - 21589435
Alignment:
| Q |
1 |
caagcgaagttcgagagagaaaataaacggaaggagatagaaaaaagggccaagaatcagcagcagatttccatcccaggtttaaaaaagtgttcttcca |
100 |
Q |
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| T |
21589916 |
caagcgaagttcgagagagaaaataaacggaaggagatagaaaaaagggccaagaatcagcagcagatttccatcccaggtttaaaaaagtgttcttcca |
21589817 |
T |
|
| Q |
101 |
cattcttgagaccaaagaagtttggtttgtaaatgttgtataatactgtgaaatatttgtaaactcatgcaaacaatgttaacgattaatcttcaaagta |
200 |
Q |
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| T |
21589816 |
cattcttgagaccaaagaagtttggtttgtaaatgttgtataatactgtgaaatatttgtaaactcatgcaaacaatgttaacgattaatcttcaaagta |
21589717 |
T |
|
| Q |
201 |
tgaatagctgatttgttgcttaagttgatttttctcatgctacttcctgctcctcatacgaatttttgtataatacataaaaattaaatatacatcaatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21589716 |
tgaatagctgatttgttgcttaagttgatttttctcatgctacttcctgctcctcatacgaatttttgtataatacataaaaattaaatatacatcaatt |
21589617 |
T |
|
| Q |
301 |
cagcatctgcaacacatacctgcatgaaatattgatcaagtataac--ataaaatatgagtataacataaattgtgtacaccccattgatcaaagtatta |
398 |
Q |
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| T |
21589616 |
cagcatctgcaacacatacctgcatgaaatattaatcaagtataacatataaaatatgagtataacatagattgtgtacaccccattgatcaaagtatta |
21589517 |
T |
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| Q |
399 |
tcctccaggagcaatgtaaattccaatactgaatcaaacatatagaataaacgtgagcaaatatctcaccaaacacataatt |
480 |
Q |
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| T |
21589516 |
tcctccaggagcaatgtaaattccaatactgaatcaaacatatagaataaacgtgagaaaatatctcaccaaacacataatt |
21589435 |
T |
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Back To:
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Target: chr2 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 42100967 - 42101132
Alignment:
| Q |
1 |
caagcgaagttcgagagagaaaataaacggaaggagatagaaaaaagggccaagaatcagcagcagatttccatcccaggtttaaaaaagtgttcttcca |
100 |
Q |
| |
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|||||| |||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| || ||||||||||||||| ||||||||| |
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| T |
42100967 |
caagcggagttggagagagaaaataaacggaaggagaaggaaaaaagggccaagagtcagcagcagatttcaattccaggtttaaaaaagggttcttcca |
42101066 |
T |
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| Q |
101 |
cattcttgagaccaaagaagtttggtttgtaaatgttgtataata-ctgtgaaatatttgtaaact |
165 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||| ||| || ||||||||||||| |
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| T |
42101067 |
cattcttgagaccaaaaaagtttggtttgtaaatgttgtataatacctgagagatatttgtaaact |
42101132 |
T |
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