View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14758_low_8 (Length: 485)
Name: NF14758_low_8
Description: NF14758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14758_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 423; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 11 - 467
Target Start/End: Complemental strand, 14783242 - 14782789
Alignment:
| Q |
11 |
catcatcaatctctcaccatgaaccctaccaacaaagaagacacaattgacattgaagccattgatcatcaagaagaagaaacacaacaacatcaaaatc |
110 |
Q |
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| T |
14783242 |
catcatcaatctctcaccacgaaccctaccaacaatgaagacacaattgacattgaagccattgatcatcaagaagaa---acacaacaacatcaaaatc |
14783146 |
T |
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| Q |
111 |
aaccatcaccatttgtcaacaacaaaaaccacctgcatgcaaatgatcaaaaatccattacaaacaaaaggtacatgccacttttgataatcaactttct |
210 |
Q |
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| T |
14783145 |
aaccatcaccatttgtcaacaacaaaaaccacctgcatgcaaatgatcaaaaatccattacaaacaaaaggtacatgccacttttgataatcaactatct |
14783046 |
T |
|
| Q |
211 |
cttactctttgttggttcaacctcatcaagtttactctcaaaatactatttcatccacaaaggttcaagcaaatgggtctcaacttgggttcaatgtgct |
310 |
Q |
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| T |
14783045 |
cttactctttgttggttcaatctcatcaagtttactctcaaaatactatttcatccacaaaggttcaagcaaatgggtctcaacttgggttcaatgtgct |
14782946 |
T |
|
| Q |
311 |
ggcttccctctcttgatcatcccaatttttctcccttatctcttcaatctcaccaaaagaaaccctttcactgatttcacaccaaaaatgttaaccctat |
410 |
Q |
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| T |
14782945 |
ggcttccctctcttgatcatcccaatttttctcccttatctcttcaatctcaccaaaagaaaccctttcactgatttcacaccgaaaatgttaaccctat |
14782846 |
T |
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| Q |
411 |
caatttttgttggtatcatgttagggtttaacaatcttttaatctcatggggtgttg |
467 |
Q |
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| T |
14782845 |
caatttttgttggtatcatgttagggtttaacaatcttttaatctcatggggtgttg |
14782789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 155 - 305
Target Start/End: Complemental strand, 14775227 - 14775077
Alignment:
| Q |
155 |
gatcaaaaatccattacaaacaaaaggtacatgccacttttgataatcaactttctcttactctttgttggttcaacctcatcaagtttactctcaaaat |
254 |
Q |
| |
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|||||||| |||| || |||||||||||||| || |||||| | || |||| || || |||||||| || ||| || ||||||||||||||||| | |
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| T |
14775227 |
gatcaaaagtccaccactaacaaaaggtacataccccttttggttattaactaccttttgctctttgtagggtcactttcttcaagtttactctcaaagt |
14775128 |
T |
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| Q |
255 |
actatttcatccacaaaggttcaagcaaatgggtctcaacttgggttcaat |
305 |
Q |
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||||||| ||||| |||||||| || | |||||| |||||||||||||||| |
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| T |
14775127 |
actattttatccataaaggttctagtagatgggtttcaacttgggttcaat |
14775077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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