View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14759_high_1 (Length: 391)
Name: NF14759_high_1
Description: NF14759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14759_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 4 - 385
Target Start/End: Original strand, 36671598 - 36671965
Alignment:
| Q |
4 |
ctctctcacacacatagttatcctctagaacaaatgcaagattgagacaacaaagatcatcttgaaggaacaaagatgttccatagttggttcccctata |
103 |
Q |
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| T |
36671598 |
ctctcacacacacatagttatcctctagaacaaatgcaagattgagacaacaaagatcatcttcaaggaacaaagatgttccatagttgattcccctgta |
36671697 |
T |
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| Q |
104 |
aacatagtatcatctgcatattatagatataaaattgtcaatccctcatcgaccgccttaaaacccaaaaattattgagagactccaacttaaagatcat |
203 |
Q |
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| T |
36671698 |
aacatagtatcatttgcatattatagacataaaattgtcaatccctcatcgaccgccttaaaacccaaaaattattgagagactccaacttaaagatcat |
36671797 |
T |
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| Q |
204 |
cccactcagaccctctaccacatataaataaagaaatcaaggaaggagatcattttgcataaggcccttatggatgtttacctcccatttgtgacaccca |
303 |
Q |
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| T |
36671798 |
cccactcggaccctctaccacatataaataaagaaatcaaggaaggagatcattttgcataaggcccttatggatgtttacctcccatttg--------- |
36671888 |
T |
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| Q |
304 |
tttatcgaaacccacacgttacctgagaaaatgcaagcaaaaattcaaaattgcaacctatcatcgaagaataatctaccca |
385 |
Q |
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| T |
36671889 |
-----cgacccccacacgttacctgagaaaatgcaagcaaaaattcaaaatcgcaacctatcatcgaagaaaaacctaccca |
36671965 |
T |
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