View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1475_high_10 (Length: 272)
Name: NF1475_high_10
Description: NF1475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1475_high_10 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-150; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 35410260 - 35410531
Alignment:
| Q |
1 |
ccatgtcaaatcgccaccaatctttataggcagcacacgtaatttgcatacagtatctcccgggagtgtagtttttctctatggaaccgtctgcattaac |
100 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35410260 |
ccatgtcaaaccgccaccaatctttataggcagcacacgtaatttgcatacagtatctcccgggagtgtagtttttctctatggaaccgtctgcattaac |
35410359 |
T |
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| Q |
101 |
gagtacctcgcgggctgttgcatttgtcttgagtgtgtatcgcatatggggatgcagaagcttgaatacaggatgcatcacgcttaattgccgatgagct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35410360 |
gagtacctcgcgggctgttgcatttgtcttgagtgtgtatcgcatatggggatgcagaagcttgaatacaggatgcatcacgcttaattgccgatgagct |
35410459 |
T |
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| Q |
201 |
gcaattattaatggttccatgcatgcgtgtattcttaacctgttcggttatcataggtcaaatgtcattact |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35410460 |
gcaattattaatggttccatgcatgcgtgtattcttaacctgttcggttatcataggtcaaatgtcattact |
35410531 |
T |
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