View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1475_high_11 (Length: 246)
Name: NF1475_high_11
Description: NF1475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1475_high_11 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-128; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 16 - 246
Target Start/End: Complemental strand, 35273763 - 35273533
Alignment:
| Q |
16 |
attacaccaatgactagccgtcggataataaataacttcaaaagtcatattcttatccgccaattctgctgcctccataacggatttttccgttatctta |
115 |
Q |
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| T |
35273763 |
attacaccaatgactagccgtcggataataaataacttcaaaagtcatattcttatccgccaattctgctgcctccataacggatttttccgttatctta |
35273664 |
T |
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| Q |
116 |
gcagcagcacttaacttgtgcctgcggattccgatgaagatcttatccttatctttatctttagaaattttcattaaaacgagggaatcgccgccaataa |
215 |
Q |
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| T |
35273663 |
gcagcagcacttaacttgtgcctgcggattccgatgaagatcttatccttatctttatctttagaaattttcattaaaacgagggaatcgccgccaataa |
35273564 |
T |
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| Q |
216 |
ttttctttgtgtcaacgaacttactccattt |
246 |
Q |
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| T |
35273563 |
ttttctttgtgtcaacgaacttactccattt |
35273533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 30 - 121
Target Start/End: Original strand, 17976371 - 17976462
Alignment:
| Q |
30 |
tagccgtcggataataaataacttcaaaagtcatattcttatccgccaattctgctgcctccataacggatttttccgttatcttagcagca |
121 |
Q |
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| T |
17976371 |
tagccgttggataatacacaacttcaaaagccaagttcttatccgccaattccactgcctccgtaaacgatttttctgttatcttagcagca |
17976462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 121
Target Start/End: Complemental strand, 8823727 - 8823655
Alignment:
| Q |
49 |
aacttcaaaagtcatattcttatccgccaattctgctgcctccataacggatttttccgttatcttagcagca |
121 |
Q |
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| T |
8823727 |
aacttcaaaagcgatgttcttattcgccaactccactgcctccataaccgattctttagttatcttagcagca |
8823655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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