View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1475_high_5 (Length: 357)
Name: NF1475_high_5
Description: NF1475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1475_high_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 106 - 348
Target Start/End: Complemental strand, 2242361 - 2242119
Alignment:
| Q |
106 |
cttatttccatttactctattatattgtataaacatggcaaactataactctaatctattcgaattgacaggatcttatccttaatgagaacggaaatga |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||| || |
|
|
| T |
2242361 |
cttatttccatttactctattatattgtataaacatggcaaactataactctaatctcttcgatttgacaggatcttatccttaatgagaatggaaaaga |
2242262 |
T |
|
| Q |
206 |
aaaggcaagtttcatctgcattcctttatatgatatcatgaaaaatcttatttccatacgactaacaaaatatgtttgcaaattatatcagtcttttaaa |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2242261 |
aaaggcaagtttcatctgcattcctttatatgatatcatgaaaaatcttatttccataagactaacaaaatatgtttgcaaattatatcagtcttttaaa |
2242162 |
T |
|
| Q |
306 |
gaggcaacgtcaggagatgtttttggagaaataggagtattat |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2242161 |
gaggcaacgtcaggagatgtttttggagaaataggagtgttat |
2242119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 2242477 - 2242405
Alignment:
| Q |
16 |
aggaagatgtagtcttgcagaatgaatcaccaacagacttttatataatggttgttggagctgcagtaagata |
88 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2242477 |
aggaagatgtagtcttgcagaatgaatcaccaacagacttttatataatggttgttggagctgcagtaagata |
2242405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University