View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1475_high_8 (Length: 302)

Name: NF1475_high_8
Description: NF1475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1475_high_8
NF1475_high_8
[»] chr7 (1 HSPs)
chr7 (17-302)||(33904496-33904781)


Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 17 - 302
Target Start/End: Complemental strand, 33904781 - 33904496
Alignment:
Q  17 ccaaggaagcatgggagaacagaatttctcttaaagtgaggatcagaagagtaacaacaattcagaaaataatccagttaatagtattttttgtttacat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33904781 ccaaggaagcatgggagaacagaatttctcttaaagtgaggatcagaagagtaacaacaattcagaaaataatccagttaatagtattttttgtttacat 33904682  T
Q  117 agtaatatagaattgaatgctacatatagaggttgaaggtagttaatttactagacaaaactattttattttctttagtgatgttagtaaaatcacaggt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33904681 agtaatatagaattgaatgctacatatagaggttgaaggtagttaatttactagacaaaactattttattttctttagtgatgttagtaaaatcacaggt 33904582  T
Q  217 ttaacttcttagctatgcttgctacatcaaatagatgtgctcgattatgcgactaggacggctaaaccaacattttacctaacaaa 302  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  33904581 ttaacttcttagctatgcttgctaaatcaaatagatgtgctcaattatgcgactaggacggttaaaccaacattttacctaacaaa 33904496  T

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