View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1475_low_1 (Length: 638)

Name: NF1475_low_1
Description: NF1475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1475_low_1
NF1475_low_1
[»] chr4 (4 HSPs)
chr4 (18-631)||(35410508-35411121)
chr4 (58-122)||(18011873-18011937)
chr4 (33-124)||(44138716-44138806)
chr4 (86-142)||(6978946-6979002)
[»] chr5 (3 HSPs)
chr5 (25-142)||(10272415-10272533)
chr5 (25-142)||(7674616-7674734)
chr5 (28-107)||(39105435-39105515)
[»] chr7 (8 HSPs)
chr7 (25-107)||(46825066-46825150)
chr7 (62-142)||(42281498-42281578)
chr7 (33-108)||(47177612-47177688)
chr7 (52-142)||(33645945-33646034)
chr7 (89-142)||(12234873-12234926)
chr7 (25-101)||(28165059-28165136)
chr7 (25-136)||(12110328-12110440)
chr7 (25-116)||(40688996-40689088)
[»] chr2 (8 HSPs)
chr2 (18-101)||(9556200-9556284)
chr2 (58-122)||(3067383-3067447)
chr2 (86-142)||(27237877-27237933)
chr2 (25-126)||(5043560-5043662)
chr2 (25-134)||(33942118-33942228)
chr2 (25-81)||(11513866-11513923)
chr2 (25-107)||(7103501-7103585)
chr2 (24-71)||(33944572-33944620)
[»] chr8 (6 HSPs)
chr8 (18-103)||(28769362-28769448)
chr8 (33-103)||(8062500-8062571)
chr8 (25-74)||(787158-787208)
chr8 (25-74)||(12361160-12361210)
chr8 (57-142)||(11569441-11569526)
chr8 (57-142)||(40071750-40071835)
[»] chr6 (5 HSPs)
chr6 (25-74)||(29274281-29274331)
chr6 (25-103)||(4006682-4006761)
chr6 (25-133)||(281841-281950)
chr6 (59-136)||(4324443-4324520)
chr6 (40-103)||(28088245-28088309)
[»] chr3 (5 HSPs)
chr3 (89-142)||(41807166-41807219)
chr3 (19-103)||(2719431-2719515)
chr3 (25-136)||(21574459-21574570)
chr3 (25-103)||(38462249-38462328)
chr3 (25-107)||(40122772-40122854)
[»] chr1 (2 HSPs)
chr1 (25-75)||(23544690-23544742)
chr1 (25-137)||(4548689-4548802)


Alignment Details
Target: chr4 (Bit Score: 577; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 577; E-Value: 0
Query Start/End: Original strand, 18 - 631
Target Start/End: Complemental strand, 35411121 - 35410508
Alignment:
Q  18 acaaactataaaattaagtcaaattgttttcataaagccataaactgttttcataagcaatcattgatagtttatgaaaataagctaaaagcagattata 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  35411121 acaaactataaaattaagtcaaattgttttcataaagccataaactgttttcataagcaatcattgatagtttatgaaaataagctaaaagcagcatata 35411022  T
Q  118 tacatgtcaaaagttgtttctataannnnnnnaaaatagtctcacaaatgcttatgccaaaagataagtccgaataactcaatccaatcatatagaatat 217  Q
    |||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35411021 tacatgtcaaaagttgtttctataatttttttaaaatagtctcacaaatgcttatgccaaaagataagtccgaataactcaatccaatcatatagaatat 35410922  T
Q  218 atccatgaaatgttatttgttttcaacttttaggcattggaagaaaacaagttgtttatactggactatcatgacatttacttgccctttcttgatcggg 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35410921 atccatgaaatgttatttgttttcaacttttaggcattggaagaaaacaagttgtttatactggactatcatgacatttacttgccctttcttgatcggg 35410822  T
Q  318 ttaatgctcttgatgagcgcaaagcttatgcaacaaccacaattttcttcctcaccaaaatcggaactctgaagcccattgcaattcagcttgctctccc 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35410821 ttaatgctcttgatgagcgcaaagcttatgcaacaaccacaattttcttcctcaccaaaatcggaactctgaagcccattgcaattcagcttgctctccc 35410722  T
Q  418 aacagacaagcaggttctaacccctgctgtagatgaaacctctaaatggctctggcaattaggcaaagctcacgtttgcgctaatgatgctggcgttcat 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35410721 aacagacaagcaggttctaacccctgctgtagatgaaacctctaaatggctctggcaattaggcaaagctcacgtttgcgctaatgatgctggcgttcat 35410622  T
Q  518 acacttgtgcaccattggtatgaattactatttccatgcaaatatatgtatttgagaaaaacttgaccaaaacttttgttttagaaatttagtaatgaca 617  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  35410621 acacttgtgcaccattggtatgaattattatttccatgcaaatatatgtatttgagaaaaacttgcccaaaacttttgttttagaaatttagtaatgaca 35410522  T
Q  618 tttgacctatgata 631  Q
    ||||||||||||||    
T  35410521 tttgacctatgata 35410508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 58 - 122
Target Start/End: Original strand, 18011873 - 18011937
Alignment:
Q  58 taaactgttttcataagcaatcattgatagtttatgaaaataagctaaaagcagattatatacat 122  Q
    |||||||||||||||||| ||| |  | |||||||||||||||||||||| | | ||||||||||    
T  18011873 taaactgttttcataagctatcttgaagagtttatgaaaataagctaaaaacggcttatatacat 18011937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 124
Target Start/End: Original strand, 44138716 - 44138806
Alignment:
Q  33 aagtcaaattgttttcata-aagccataaactgttttcataagcaatcattgatagtttatgaaaataagctaaaagcagattatatacatgt 124  Q
    |||||||  |||||||||| |||| ||||| ||||||||||||| ||  ||| ||| ||||||||||||||| ||| || ||||| |||||||    
T  44138716 aagtcaatctgttttcatataagctataaaatgttttcataagctat--ttgttagcttatgaaaataagctgaaaacaaattatgtacatgt 44138806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 86 - 142
Target Start/End: Complemental strand, 6979002 - 6978946
Alignment:
Q  86 agtttatgaaaataagctaaaagcagattatatacatgtcaaaagttgtttctataa 142  Q
    |||||||||||||||||| ||| ||| ||||| |||||||| ||||| |||| ||||    
T  6979002 agtttatgaaaataagctgaaaacagcttatagacatgtcataagttatttcaataa 6978946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 7e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 25 - 142
Target Start/End: Complemental strand, 10272533 - 10272415
Alignment:
Q  25 ataaaattaagtcaaattgttttcata-aagccataaactgttttcataagcaatcattgatagtttatgaaaataagctaaaagcagattatatacatg 123  Q
    |||||||||||||||||||||||| || |||| ||||  ||||||||||||| ||| | || |||||||||||||||||| ||| ||  ||| | |||||    
T  10272533 ataaaattaagtcaaattgttttcgtataagctataagttgttttcataagccatcttggagagtttatgaaaataagctgaaaacaacttacagacatg 10272434  T
Q  124 tcaaaagttgtttctataa 142  Q
    ||| |||||||||||||||    
T  10272433 tcataagttgtttctataa 10272415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 142
Target Start/End: Original strand, 7674616 - 7674734
Alignment:
Q  25 ataaaattaagtcaaattgttttcata-aagccataaactgttttcataagcaatcattgatagtttatgaaaataagctaaaagcagattatatacatg 123  Q
    ||||||| || | ||||||||||| || |||||||||| ||||||||||||| ||| | || | ||| |||||||||||| ||| ||  ||||| |||||    
T  7674616 ataaaataaatttaaattgttttcttataagccataaaatgttttcataagctatcttggagaatttgtgaaaataagctgaaaacaccttataaacatg 7674715  T
Q  124 tcaaaagttgtttctataa 142  Q
    ||| |||||||||| ||||    
T  7674716 tcataagttgtttccataa 7674734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 28 - 107
Target Start/End: Original strand, 39105435 - 39105515
Alignment:
Q  28 aaattaagtcaaattgttttcata-aagccataaactgttttcataagcaatcattgatagtttatgaaaataagctaaaa 107  Q
    |||| |||| ||||||||||| || |||| |||| |||||||||||||| ||| | || |  |||||||||||||||||||    
T  39105435 aaatgaagttaaattgttttcgtataagctataatctgttttcataagctatcttggagaacttatgaaaataagctaaaa 39105515  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 107
Target Start/End: Original strand, 46825066 - 46825150
Alignment:
Q  25 ataaaattaagtcaaattgttttcata-aagccataaactgttttcataagcaatcattgatagtttatga-aaataagctaaaa 107  Q
    ||||||| ||||||||||||||||||| ||||||||||| |||||||||||| ||| | ||  | |||||| |||||||||||||    
T  46825066 ataaaataaagtcaaattgttttcatataagccataaaccgttttcataagctatcttggagtgcttatgagaaataagctaaaa 46825150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 62 - 142
Target Start/End: Complemental strand, 42281578 - 42281498
Alignment:
Q  62 ctgttttcataagcaatcattgatagtttatgaaaataagctaaaagcagattatatacatgtcaaaagttgtttctataa 142  Q
    |||||||||||||| |||| ||| || ||||  ||||||||| ||| || ||||| ||||||||| ||| |||||||||||    
T  42281578 ctgttttcataagctatcactgagagcttatagaaataagctgaaaacaaattatttacatgtcataagctgtttctataa 42281498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 33 - 108
Target Start/End: Original strand, 47177612 - 47177688
Alignment:
Q  33 aagtcaaattgttttcata-aagccataaactgttttcataagcaatcattgatagtttatgaaaataagctaaaag 108  Q
    |||| |||||||||||||| |||| |||| ||||||||| |||| ||| | || | |||||||||||||||||||||    
T  47177612 aagttaaattgttttcatataagctataagctgttttcaaaagctatcttggagaatttatgaaaataagctaaaag 47177688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 52 - 142
Target Start/End: Complemental strand, 33646034 - 33645945
Alignment:
Q  52 aagccataaactgttttcataagcaatcattgatagtttatgaaaataagctaaaagcagattatatacatgtcaaaagttgtttctataa 142  Q
    |||| ||||||||||||||||||| ||| | || || ||||| |||||| |||||| ||  ||||| |||||||| |||||||||| ||||    
T  33646034 aagctataaactgttttcataagctatc-tggagagcttatggaaataacctaaaaacaacttatagacatgtcataagttgtttccataa 33645945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 142
Target Start/End: Complemental strand, 12234926 - 12234873
Alignment:
Q  89 ttatgaaaataagctaaaagcagattatatacatgtcaaaagttgtttctataa 142  Q
    ||||| ||||||||| ||| ||| ||||| |||||||| |||||||||||||||    
T  12234926 ttatggaaataagctgaaaacagcttatagacatgtcataagttgtttctataa 12234873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 101
Target Start/End: Original strand, 28165059 - 28165136
Alignment:
Q  25 ataaaattaagtcaaattgttttcata-aagccataaactgttttcataagcaatcattgatagtttatgaaaataag 101  Q
    ||||||| ||||||||||||||| ||| |||| ||||||||| || |||||| ||||| || || ||||| |||||||    
T  28165059 ataaaatgaagtcaaattgttttaatataagctataaactgtctttataagctatcatggagagcttatggaaataag 28165136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 25 - 136
Target Start/End: Original strand, 12110328 - 12110440
Alignment:
Q  25 ataaaattaagtcaaattgttttcata-aagccataaactgttttcataagcaatcattgatagtttatgaaaataagctaaaagcagattatatacatg 123  Q
    ||||||| |||||||||||||||  || |||| |||| |||||||||||||| ||| |  | |  |||||||||||| |||||| ||| || |  |||||    
T  12110328 ataaaataaagtcaaattgttttggtataagctataagctgttttcataagctatcttgaagaacttatgaaaataatctaaaaacagtttgtgaacatg 12110427  T
Q  124 tcaaaagttgttt 136  Q
    ||| |||||||||    
T  12110428 tcataagttgttt 12110440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 25 - 116
Target Start/End: Complemental strand, 40689088 - 40688996
Alignment:
Q  25 ataaaattaagtcaaattgttttcata-aagccataaactgttttcataagcaatcattgatagtttatgaaaataagctaaaagcagattat 116  Q
    ||||||| |||| ||||| |||||||| |||| |||| |||| ||||||||| ||| | ||||  ||||||||||||||| ||| ||| ||||    
T  40689088 ataaaataaagttaaattattttcatataagctataagctgtgttcataagctatcctggataacttatgaaaataagctcaaaacagcttat 40688996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 9556200 - 9556284
Alignment:
Q  18 acaaactataaaattaagtcaaattgttttcata-aagccataaactgttttcataagcaatcattgatagtttatgaaaataag 101  Q
    |||||| ||||||| |||||||  |||||||||| |||| ||||||||||||||||||| ||| | || || |||||||||||||    
T  9556200 acaaacgataaaataaagtcaacgtgttttcatacaagctataaactgttttcataagctatcctagaaagcttatgaaaataag 9556284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 58 - 122
Target Start/End: Complemental strand, 3067447 - 3067383
Alignment:
Q  58 taaactgttttcataagcaatcattgatagtttatgaaaataagctaaaagcagattatatacat 122  Q
    |||||||||||||||||| ||| |  | |||||||||||||||||||||| | | ||||||||||    
T  3067447 taaactgttttcataagctatcttgaagagtttatgaaaataagctaaaaacggcttatatacat 3067383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 86 - 142
Target Start/End: Complemental strand, 27237933 - 27237877
Alignment:
Q  86 agtttatgaaaataagctaaaagcagattatatacatgtcaaaagttgtttctataa 142  Q
    |||||||| ||||||||||||| ||| |||| ||||||||| ||| |||||||||||    
T  27237933 agtttatggaaataagctaaaaacagcttatgtacatgtcataagctgtttctataa 27237877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 25 - 126
Target Start/End: Complemental strand, 5043662 - 5043560
Alignment:
Q  25 ataaaattaagtcaaattgttttcata-aagccataaactgttttcataagcaatcattgatagtttatgaaaataagctaaaagcagattatatacatg 123  Q
    ||||||| |||||||| |||||||||| |||| | ||  ||||||||||||| ||||| ||||| | |||||| | |||| ||| ||  |||||||||||    
T  5043662 ataaaataaagtcaaactgttttcatataagctagaagttgttttcataagctatcatggatagctaatgaaagttagcttaaaacaacttatatacatg 5043563  T
Q  124 tca 126  Q
    |||    
T  5043562 tca 5043560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 25 - 134
Target Start/End: Original strand, 33942118 - 33942228
Alignment:
Q  25 ataaaattaagtcaaattgttttcata-aagccataaactgttttcataagcaatcattgatagtttatgaaaataagctaaaagcagattatatacatg 123  Q
    ||||||| |||||||| |||||||||  |||| ||||  ||||||||||||| ||||| || || | |||||||| |||| ||| ||| ||||  |||||    
T  33942118 ataaaataaagtcaaactgttttcatgtaagctataagttgttttcataagccatcatagagagctaatgaaaattagctgaaaacagcttatgaacatg 33942217  T
Q  124 tcaaaagttgt 134  Q
    ||| |||||||    
T  33942218 tcataagttgt 33942228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 11513866 - 11513923
Alignment:
Q  25 ataaaattaagtcaaattgttttcata-aagccataaactgttttcataagcaatcat 81  Q
    ||||||| ||||||||||||||||||| |||| ||||  ||||||||||||| |||||    
T  11513866 ataaaataaagtcaaattgttttcatataagctataagttgttttcataagctatcat 11513923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 25 - 107
Target Start/End: Complemental strand, 7103585 - 7103501
Alignment:
Q  25 ataaaattaagtcaaattgttttcata-aagccataaactgtttt-cataagcaatcattgatagtttatgaaaataagctaaaa 107  Q
    ||||||| |||||||| |||||| ||| |||| |||| ||||||| ||||||| ||| | || ||||| ||||||||||||||||    
T  7103585 ataaaataaagtcaaactgttttaatataagctataagctgtttttcataagctatcttagagagtttgtgaaaataagctaaaa 7103501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 33944572 - 33944620
Alignment:
Q  24 tataaaattaagtcaaattgttttcata-aagccataaactgttttcat 71  Q
    |||||||| ||||||||||||||||||| |||| ||||| |||||||||    
T  33944572 tataaaataaagtcaaattgttttcatataagctataaattgttttcat 33944620  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 28769448 - 28769362
Alignment:
Q  18 acaaactataaaattaagtcaaattgttttcata-aagccataaactgttttcataagcaatcattgatagtttatgaaaataagct 103  Q
    ||||||||||||||||||||||| | ||||| || |||| |||| |||||||||||||| ||  | || |||||||| |||||||||    
T  28769448 acaaactataaaattaagtcaaactattttcttataagctataagctgttttcataagctattttggagagtttatggaaataagct 28769362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 103
Target Start/End: Original strand, 8062500 - 8062571
Alignment:
Q  33 aagtcaaattgttttcata-aagccataaactgttttcataagcaatcattgatagtttatgaaaataagct 103  Q
    ||||||||||||||||||| |||| ||||  |||| |||||||| ||| | || ||||||||||||||||||    
T  8062500 aagtcaaattgttttcatataagctataagatgttctcataagctatcttagagagtttatgaaaataagct 8062571  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 787208 - 787158
Alignment:
Q  25 ataaaattaagtcaaattgttttcata-aagccataaactgttttcataag 74  Q
    ||||||| ||||||||||||| ||||| |||| ||||||||||||||||||    
T  787208 ataaaataaagtcaaattgttatcatataagctataaactgttttcataag 787158  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 12361160 - 12361210
Alignment:
Q  25 ataaaattaagtcaaattgttttcata-aagccataaactgttttcataag 74  Q
    ||||||| ||||||||||||||||||| |||| |||| |||||||||||||    
T  12361160 ataaaatgaagtcaaattgttttcatataagctataagctgttttcataag 12361210  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 142
Target Start/End: Complemental strand, 11569526 - 11569441
Alignment:
Q  57 ataaactgttttcataagcaatcattgatagtttatgaaaataagctaaaagcagattatatacatgtcaaaagttgtttctataa 142  Q
    |||| |||||||||||||| ||||| || || || |||||||||||| ||| ||  |||| ||||||||| ||| |||||| ||||    
T  11569526 ataagctgttttcataagctatcatggagagattttgaaaataagctgaaaacaacttatgtacatgtcataagctgtttccataa 11569441  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 142
Target Start/End: Original strand, 40071750 - 40071835
Alignment:
Q  57 ataaactgttttcataagcaatcattgatagtttatgaaaataagctaaaagcagattatatacatgtcaaaagttgtttctataa 142  Q
    |||||||||||||| |||| ||| | || || |||||||||| || | ||||| ||||||  |||||||| |||||||||| ||||    
T  40071750 ataaactgttttcagaagctatcctagaaagcttatgaaaattagttgaaagctgattatgaacatgtcataagttgtttccataa 40071835  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 29274331 - 29274281
Alignment:
Q  25 ataaaattaagtcaaattgttttcata-aagccataaactgttttcataag 74  Q
    ||||||| ||||||||||||||||||| |||| ||||||||||||||||||    
T  29274331 ataaaataaagtcaaattgttttcatataagctataaactgttttcataag 29274281  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 103
Target Start/End: Original strand, 4006682 - 4006761
Alignment:
Q  25 ataaaattaagtcaaattgttttcata-aagccataaactgttttcataagcaatcattgatagtttatgaaaataagct 103  Q
    ||||||| ||||||||||||||| ||| |||| ||||  ||||||||||||| |||  ||| || |||||||||||||||    
T  4006682 ataaaataaagtcaaattgtttttatataagctataagttgttttcataagctatccctgagaggttatgaaaataagct 4006761  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 133
Target Start/End: Complemental strand, 281950 - 281841
Alignment:
Q  25 ataaaattaagtcaaattgttttcata-aagccataaactgttttcataagcaatcattgatagtttatgaaaataagctaaaagcagattatatacatg 123  Q
    ||||||| ||||||| ||||||||||| |||| |||| |||| ||||||||| ||| | || || | ||| ||||||||| ||| ||  ||||| |||||    
T  281950 ataaaataaagtcaacttgttttcatataagctataagctgtgttcataagctatcctagagagctcatggaaataagctgaaaacaacttatagacatg 281851  T
Q  124 tcaaaagttg 133  Q
    ||| ||||||    
T  281850 tcataagttg 281841  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 136
Target Start/End: Complemental strand, 4324520 - 4324443
Alignment:
Q  59 aaactgttttcataagcaatcattgatagtttatgaaaataagctaaaagcagattatatacatgtcaaaagttgttt 136  Q
    ||||||||||||||||| ||| | || |  ||||| ||||||||||||||||| |||   |||||||| |||||||||    
T  4324520 aaactgttttcataagctatcctggaaaacttatgcaaataagctaaaagcagtttagggacatgtcataagttgttt 4324443  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 40 - 103
Target Start/End: Complemental strand, 28088309 - 28088245
Alignment:
Q  40 attgttttcata-aagccataaactgttttcataagcaatcattgatagtttatgaaaataagct 103  Q
    |||||||||||| |||| ||||||||||||||||||| ||||| || || | ||| |||||||||    
T  28088309 attgttttcatataagctataaactgttttcataagctatcatggagagctcatggaaataagct 28088245  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 89 - 142
Target Start/End: Original strand, 41807166 - 41807219
Alignment:
Q  89 ttatgaaaataagctaaaagcagattatatacatgtcaaaagttgtttctataa 142  Q
    ||||||||||||||||||||||| ||| |||||||||| ||| |||||| ||||    
T  41807166 ttatgaaaataagctaaaagcagcttacatacatgtcataagatgtttccataa 41807219  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 103
Target Start/End: Original strand, 2719431 - 2719515
Alignment:
Q  19 caaactataaaattaagtcaaattgttttcataaagccataaactgttttcataagcaatcattgatagtttatgaaaataagct 103  Q
    |||| |||||||| |||| ||||||||||  | |||| ||||||||||||||||||| ||| | || |  |||||||||||||||    
T  2719431 caaaatataaaataaagtgaaattgttttgtttaagctataaactgttttcataagctatcttggagaacttatgaaaataagct 2719515  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 136
Target Start/End: Original strand, 21574459 - 21574570
Alignment:
Q  25 ataaaattaagtcaaattgttttcata-aagccataaactgttttcataagcaatcattgatagtttatgaaaataagctaaaagcagattatatacatg 123  Q
    ||||||| |||| ||||||||| |||| |||| |||| || |||| |||||| | ||| || || ||||| ||||||||||||||||| ||||  |||||    
T  21574459 ataaaataaagttaaattgtttacatataagctataa-ctttttttataagctaacatggagagcttatggaaataagctaaaagcagcttatgaacatg 21574557  T
Q  124 tcaaaagttgttt 136  Q
    ||| |||||||||    
T  21574558 tcataagttgttt 21574570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 103
Target Start/End: Original strand, 38462249 - 38462328
Alignment:
Q  25 ataaaattaagtcaaattgttttcataaa-gccataaactgttttcataagcaatcattgatagtttatgaaaataagct 103  Q
    ||||||| |||||||| |||||||||| | || ||||||||||||||||||| |||   ||||| ||||| |||||||||    
T  38462249 ataaaataaagtcaaactgttttcatatatgctataaactgttttcataagctatccaagatagcttatggaaataagct 38462328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 25 - 107
Target Start/End: Complemental strand, 40122854 - 40122772
Alignment:
Q  25 ataaaattaagtcaaattgttttcataaagccataaactgttttcataagcaatcattgatagtttatgaaaataagctaaaa 107  Q
    ||||||| |||||||| |||||||||||||| ||||  |||||| |||||| ||| |  | |||| ||| |||||||||||||    
T  40122854 ataaaataaagtcaaactgttttcataaagctataagttgtttttataagctatcctaaaaagttaatggaaataagctaaaa 40122772  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 75
Target Start/End: Complemental strand, 23544742 - 23544690
Alignment:
Q  25 ataaaattaagtcaaattgttttcata-aagcca-taaactgttttcataagc 75  Q
    ||||||||||||||||||||||||||| |||| | ||||||||||||||||||    
T  23544742 ataaaattaagtcaaattgttttcatataagctattaaactgttttcataagc 23544690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 137
Target Start/End: Original strand, 4548689 - 4548802
Alignment:
Q  25 ataaaattaagtcaaattgttttcata-aagccataaactgttttcataagcaatcattgatagtttatgaaaataagctaaaagcagattatatacatg 123  Q
    ||||||| |||||||| |||||| ||| ||| ||||| |||||||||||||| ||| | || || ||  ||||||||||||||| ||  ||| |  ||||    
T  4548689 ataaaataaagtcaaactgtttttatacaagtcataagctgttttcataagctatcttggagagcttcagaaaataagctaaaaacaacttacaggcatg 4548788  T
Q  124 tcaaaagttgtttc 137  Q
    ||| ||||||||||    
T  4548789 tcataagttgtttc 4548802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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