View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1475_low_10 (Length: 282)
Name: NF1475_low_10
Description: NF1475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1475_low_10 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 17 - 282
Target Start/End: Complemental strand, 33905129 - 33904864
Alignment:
| Q |
17 |
aagctcaatttcatcactgattatgacaggaacacagtgacttgcaattgcatcgaataagcgatttgatgatggcgtgtcgccagctatgttgagacag |
116 |
Q |
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| T |
33905129 |
aagctcaatttcatcactgattatgacaggaacacagtgacttgcaattgcatcgaataagcgatttgatgatggcgtgtcgccagctatgttgagacag |
33905030 |
T |
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| Q |
117 |
aatttcgaagatcgcatgccgtttgttgcattcctcactccacctttctgtacacttccaaatgaaaaatgtacatctttttcttctttcagaagataaa |
216 |
Q |
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| T |
33905029 |
aatttcgaagatcgcatgccgtttgttgcattcctcactccacctttctgtacacttccaaatgaaaaatgtacatctttttcttctttcagaagataaa |
33904930 |
T |
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| Q |
217 |
atagttcttgcctagcataaccaccctgtgcatgagaaaaacccactttgagcacaattaatgatt |
282 |
Q |
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| T |
33904929 |
atagttcttgcctagcataaccaccctgtgcatgagaaaaacccactttgagcacaattaatgatt |
33904864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 244
Target Start/End: Original strand, 9326471 - 9326697
Alignment:
| Q |
18 |
agctcaatttcatcactgattatgacaggaacacagtgacttgcaattgcatcgaataagcgatttgatgatggcgtgtcgccagctatgttgagacaga |
117 |
Q |
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| T |
9326471 |
agctcaatttcatcactgatgatcacagggacacaatgactagcaattgcgtcgaacaagcggtttgatgaaggtgtgtcgcctgctatgtttaggcaaa |
9326570 |
T |
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| Q |
118 |
atttcgaagatcgcatgccgtttgttgcattcctcactccacctttctgtacacttccaaatgaaaaatgtacatctttttcttctttcagaagataaaa |
217 |
Q |
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| T |
9326571 |
atttcgacaaacgcattccttctgttgctttcttgattccatctttttgaatgcttccaaatgaaaaatgtacatccttttcatttttcaaagaataata |
9326670 |
T |
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| Q |
218 |
tagttcttgcctagcataaccaccctg |
244 |
Q |
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| T |
9326671 |
tagttcttgcctcacataacctccctg |
9326697 |
T |
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