View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1475_low_13 (Length: 246)
Name: NF1475_low_13
Description: NF1475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1475_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 2531497 - 2531701
Alignment:
| Q |
1 |
ttgaagggaaaataggtgcaccttcaaaggtaggttggaaagcacagtcatattggattaccgtgcaatctgtagaaggactcacaattgaaggtaatgg |
100 |
Q |
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| T |
2531497 |
ttgaagggaaaatagttgcaccttcaaaggtaggttggaaagctcagtcatattggattaccgtgcaatctgtagaaggactcacaattgaaggtaatgg |
2531596 |
T |
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| Q |
101 |
tcgaggagtactcgatggagatggttcgacttggtggcaatgcaaatcatgtgctcgacctggggtatgtatcatcttaaacaattgaca-ccccctaca |
199 |
Q |
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| T |
2531597 |
tcgaggagtactcgatggagatggttcgacttggtggcaatgcaaatcatgtgctcgacctggggtatgtatcatcttatacaattgacatccccctaca |
2531696 |
T |
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| Q |
200 |
cacac |
204 |
Q |
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||||| |
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| T |
2531697 |
cacac |
2531701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 2540820 - 2541008
Alignment:
| Q |
1 |
ttgaagggaaaataggtgcaccttcaaaggtaggttggaaagcacagtcatattggattaccgtgcaatctgtagaaggactcacaattgaaggtaatgg |
100 |
Q |
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||||||||||||||| ||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||| |||| |
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| T |
2540820 |
ttgaagggaaaatagttgcaccttctaaggtacattggaaagctcagtcatattggattaccgtgcaatctgtagaaggactcacaattaatggtcatgg |
2540919 |
T |
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| Q |
101 |
tcgaggagtactcgatggagatggttcgacttggtggcaatgcaaatcatgtgctcgacctggggtatgtatcatcttaaacaattgac |
189 |
Q |
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| T |
2540920 |
tcgaggagtactcgatggagatggttcgacttggtggcaatgcaaatcatgtgatcgacctggggtatgtatcatcttaaacaattgac |
2541008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 1829607 - 1829743
Alignment:
| Q |
1 |
ttgaagggaaaataggtgcaccttcaaaggtaggttggaaagcacagtcatattggattaccgtgcaatctgtagaaggactcacaattgaaggtaatgg |
100 |
Q |
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|||||||| | |||| |||||| || |||| | || ||||||||| ||||||||| |||| | ||| |||| | |||||||||||||| |||||||| |
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| T |
1829607 |
ttgaagggcagatagttgcaccctctaaggcaaattcgaaagcacaatcatattggtttactattgaatatgtaaatggactcacaattgatggtaatgg |
1829706 |
T |
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| Q |
101 |
tcgaggagtactcgatggagatggttcgacttggtgg |
137 |
Q |
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| T |
1829707 |
tcaaggaggacttgatggagacggttctacttggtgg |
1829743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 1864052 - 1864188
Alignment:
| Q |
1 |
ttgaagggaaaataggtgcaccttcaaaggtaggttggaaagcacagtcatattggattaccgtgcaatctgtagaaggactcacaattgaaggtaatgg |
100 |
Q |
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|||||||| | |||| |||||| || |||| | || ||||||||| ||||||||| |||| | ||| |||| | |||||||||||||| |||||||| |
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| T |
1864052 |
ttgaagggcagatagttgcaccctctaaggcaaattcgaaagcacaatcatattggtttactattgaatatgtaaatggactcacaattgatggtaatgg |
1864151 |
T |
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| Q |
101 |
tcgaggagtactcgatggagatggttcgacttggtgg |
137 |
Q |
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|| ||||| ||| |||||||| ||||| ||||||||| |
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| T |
1864152 |
tcaaggaggacttgatggagacggttctacttggtgg |
1864188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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