View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1475_low_14 (Length: 236)
Name: NF1475_low_14
Description: NF1475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1475_low_14 |
 | |
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| [»] scaffold0016 (1 HSPs) |
| | |
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| [»] scaffold0642 (1 HSPs) |
| | |
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| [»] scaffold0345 (1 HSPs) |
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| [»] scaffold0105 (1 HSPs) |
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Alignment Details
Target: scaffold0016 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 50970 - 51190
Alignment:
| Q |
1 |
gtggatgcatttcagatcnnnnnnnccactaattttctatcagcaggaatccaagtgcttctgaagttctgatatgtgtatggcagttaaaatctttgtt |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50970 |
gtggatgcatttcagatctttttttccactaattttctatcagcaggaatccaagtgcttctgaagttctgatatgtgtatggcagttaaaatctttgtt |
51069 |
T |
|
| Q |
101 |
ttttgcagcaacttctgcaccttgagtatgcacaatccttctttgcttggttcccagagtcttgacattttagaccctttaacacttcttctccccctaa |
200 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
51070 |
tt-tgcagcaacttctgcaccttgagtatgcacaatccttctttgcttggttcccacagtcttgacattttagactctttaacacttcttcgccccctaa |
51168 |
T |
|
| Q |
201 |
ttgggttgaatacatttctttc |
222 |
Q |
| |
|
||||||||||||||||| |||| |
|
|
| T |
51169 |
ttgggttgaatacatttttttc |
51190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0642 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: scaffold0642
Description:
Target: scaffold0642; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 6981 - 6764
Alignment:
| Q |
1 |
gtggatgcatttcagatcnnnnnnnccactaattttctatcagcaggaatccaagtgcttctgaagttctgatatgtgtatggcagttaaaatctttgtt |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
6981 |
gtggatgcatttcagatctttttttccactaattttctatcagcaggaatccaagtgcttctgaagttttgatatgtgtatggcagttaaaatctttgtt |
6882 |
T |
|
| Q |
101 |
ttttgcagcaacttctgcaccttgagtatgcacaatccttctttgcttggttcccagagtcttgacattttagaccctttaacacttcttctccccctaa |
200 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||| |
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|
| T |
6881 |
ttt-gcagcaacttctgcaccttgagtatgcacaatccttctttgcttggttcccacagtcttaacattttagaccctttaacac---ttctccccctaa |
6786 |
T |
|
| Q |
201 |
ttgggttgaatacatttctttc |
222 |
Q |
| |
|
||||||||||||||||| |||| |
|
|
| T |
6785 |
ttgggttgaatacatttttttc |
6764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: scaffold0345
Description:
Target: scaffold0345; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 16894 - 16677
Alignment:
| Q |
1 |
gtggatgcatttcagatcnnnnnnnccactaattttctatcagcaggaatccaagtgcttctgaagttctgatatgtgtatggcagttaaaatctttgtt |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
16894 |
gtggatgcatttcagatctttttttccactaattttctatcagcaggaatccaagtgcttctgaagttttgatatgtgtatggcagttaaaatctttgtt |
16795 |
T |
|
| Q |
101 |
ttttgcagcaacttctgcaccttgagtatgcacaatccttctttgcttggttcccagagtcttgacattttagaccctttaacacttcttctccccctaa |
200 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
16794 |
ttt-gcagcaacttctgcaccttgagtatgcacaatccttctttgcttggttcccacagtcttaacattttagaccctttaacac---ttctccccctaa |
16699 |
T |
|
| Q |
201 |
ttgggttgaatacatttctttc |
222 |
Q |
| |
|
||||||||||||||||| |||| |
|
|
| T |
16698 |
ttgggttgaatacatttttttc |
16677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 22088 - 22305
Alignment:
| Q |
1 |
gtggatgcatttcagatcnnnnnnnccactaattttctatcagcaggaatccaagtgcttctgaagttctgatatgtgtatggcagttaaaatctttgtt |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
22088 |
gtggatgcatttcagatctttttttccactaattttctatcagcaggaatccaagtgcttctgaagttttgatatgtgtatggcagttaaaatctttgtt |
22187 |
T |
|
| Q |
101 |
ttttgcagcaacttctgcaccttgagtatgcacaatccttctttgcttggttcccagagtcttgacattttagaccctttaacacttcttctccccctaa |
200 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
22188 |
tt-tgcagcaacttctgcaccttgagtatgcacaatccttctttgcttggttcccacagtcttaacattttagaccctttaaca---cttctccccctaa |
22283 |
T |
|
| Q |
201 |
ttgggttgaatacatttctttc |
222 |
Q |
| |
|
||||||||||||||||| |||| |
|
|
| T |
22284 |
ttgggttgaatacatttttttc |
22305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 44498598 - 44498381
Alignment:
| Q |
1 |
gtggatgcatttcagatcnnnnnnnccactaattttctatcagcaggaatccaagtgcttctgaagttctgatatgtgtatggcagttaaaatctttgtt |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44498598 |
gtggatgcatttcagatctttttttccactaattttctatcagcaggaatccaagtgcttctgaagttctgatatgtgtatggcagttaaaatctttgtt |
44498499 |
T |
|
| Q |
101 |
ttttgcagcaacttctgcaccttgagtatgcacaatccttctttgcttggttcccagagtcttgacattttagaccctttaacacttcttctccccctaa |
200 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
44498498 |
ttt-gcagcaacttctgcaccttgagtatgcacaatccttctttgcttggttcccacagtcttaacattttagaccctttaacac---ttctccccctag |
44498403 |
T |
|
| Q |
201 |
ttgggttgaatacatttctttc |
222 |
Q |
| |
|
||||||||||||||||| |||| |
|
|
| T |
44498402 |
ttgggttgaatacatttttttc |
44498381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 3381200 - 3380984
Alignment:
| Q |
1 |
gtggatgcatttcagatcnnnnnnnccactaattttctatcagcaggaatccaagtgcttctgaagttctgatatgtgtatggcagttaaaatctttgtt |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
3381200 |
gtggatgcatttcagatctttttttccactaattttctatcagcaggaatccaagtgcttctgaagttctgatatgtgtttggcagttaaaatctttgtt |
3381101 |
T |
|
| Q |
101 |
ttttgcagcaacttctgcaccttgagtatgcacaatccttctttgcttggttcccagagtcttgacattttagaccctttaacacttcttctccccctaa |
200 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
3381100 |
ttt-gcagcaacttctgcaccttgagtatgcacaatccttctttgcttggttcccacagtcttgacattttagtccctttaacacttct----cccctaa |
3381006 |
T |
|
| Q |
201 |
ttgggttgaatacatttctttc |
222 |
Q |
| |
|
||||||||||||||||| |||| |
|
|
| T |
3381005 |
ttgggttgaatacatttttttc |
3380984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 159; Significance: 8e-85; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 26 - 222
Target Start/End: Complemental strand, 15709112 - 15708920
Alignment:
| Q |
26 |
ccactaattttctatcagcaggaatccaagtgcttctgaagttctgatatgtgtatggcagttaaaatctttgttttttgcagcaacttctgcaccttga |
125 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
15709112 |
ccactaattttctatcagcaggaatccaagtgcttctgaagttttgatatgtgtatggcagttaaaatctttgttttt-gcagcaacttctgcaccttga |
15709014 |
T |
|
| Q |
126 |
gtatgcacaatccttctttgcttggttcccagagtcttgacattttagaccctttaacacttcttctccccctaattgggttgaatacatttctttc |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
15709013 |
gtatgcacaatccttctttgcttggttcccacagtcttaacattttagaccctttaacac---ttctccccctaattgggttgaatacatttttttc |
15708920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 67 - 211
Target Start/End: Original strand, 26795723 - 26795866
Alignment:
| Q |
67 |
ttctgatatgtgtatggcagttaaaatctttgttttttgcagcaacttctgcaccttgagtatgcacaatccttctttgcttggttcccagagtcttgac |
166 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
26795723 |
ttctgatatgtgtatggcagttaaaacctttgtttt-tgcagcaacttctgcaccttgagtatgcacaatccttctttgcttggttcccacagtcttgac |
26795821 |
T |
|
| Q |
167 |
attttagaccctttaacacttcttctccccctaattgggttgaat |
211 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
26795822 |
attttggaccctttaacacttcttcttcccctaattgtgttgaat |
26795866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 64
Target Start/End: Original strand, 30112132 - 30112170
Alignment:
| Q |
26 |
ccactaattttctatcagcaggaatccaagtgcttctga |
64 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30112132 |
ccactaattttctatcagcaggaatccaagtgcttctga |
30112170 |
T |
|
Back To:
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