View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1475_low_15 (Length: 236)
Name: NF1475_low_15
Description: NF1475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1475_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 13 - 220
Target Start/End: Complemental strand, 2531419 - 2531212
Alignment:
| Q |
13 |
caattaaaacttatacatatgattataagtttattgtactaggtcttaaaagtgaacgttagatatactaaatacctgaataagaatatttttgttggtg |
112 |
Q |
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| T |
2531419 |
caattaaaacttatacatatgattataagtttattgtactaggtcttaaaagtgaatgttagatatattaaatacctgaataagaatatttttgttggtg |
2531320 |
T |
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| Q |
113 |
caaggaccgctaaaacttagtttcgacaccataaatgtttttcctgctggtatgaccagtgttgacatctctgctgctttacacgcactactccatgcac |
212 |
Q |
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| T |
2531319 |
caaggaccgctaaaacttagtttcgacaccataaatgtttttcctacgggtatgaccagtgttgacatctctgctgctttacacgcactactccatgcac |
2531220 |
T |
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| Q |
213 |
tgacaaat |
220 |
Q |
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|||||||| |
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| T |
2531219 |
tgacaaat |
2531212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 2540766 - 2540548
Alignment:
| Q |
1 |
ttttaaaagccgcaattaaaacttatacatatgattataagtttattgtactaggtcttaaaagtgaacgttagatatactaaatacctgaataagaata |
100 |
Q |
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| T |
2540766 |
ttttaaaagccgcaattaaaacttataca-atgattataagtttattgtactaggtcttaaaagtgaatgttagatatattaaatacctgaataagaata |
2540668 |
T |
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| Q |
101 |
tttttgttggtgcaaggaccgctaaaacttagtttcgacaccataaatgtttttcctgctggtatgaccagtgttgacatctctgctgctttacacgcac |
200 |
Q |
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| T |
2540667 |
tgtttgttggtgcaaggaccgttaaaacttagtttcgacaccataaatgtttttcctactggtataaccagtgttgacatctctgctgctttacacgcac |
2540568 |
T |
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| Q |
201 |
tactccatgcactgacaaat |
220 |
Q |
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| T |
2540567 |
tattccatgccctgacaaat |
2540548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 117 - 201
Target Start/End: Complemental strand, 1827912 - 1827828
Alignment:
| Q |
117 |
gaccgctaaaacttagtttcgacaccataaatgtttttcctgctggtatgaccagtgttgacatctctgctgctttacacgcact |
201 |
Q |
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| T |
1827912 |
gaccgctaaaaattactttcgacaccataaatgtttttcctgccggtataactagtgttgacatcccagttgctttacacgcact |
1827828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 117 - 201
Target Start/End: Complemental strand, 1862357 - 1862273
Alignment:
| Q |
117 |
gaccgctaaaacttagtttcgacaccataaatgtttttcctgctggtatgaccagtgttgacatctctgctgctttacacgcact |
201 |
Q |
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| T |
1862357 |
gaccgctaaaaattactttcgacaccataaatgtttttcctgccggtataactagtgttgacatcccagttgctttacacgcact |
1862273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 111 - 220
Target Start/End: Complemental strand, 2562505 - 2562396
Alignment:
| Q |
111 |
tgcaaggaccgctaaaacttagtttcgacaccataaatgtttttcctgctggtatgaccagtgttgacatctctgctgctttacacgcactactccatgc |
210 |
Q |
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| T |
2562505 |
tgcaaggaccactaaaatttgctttcgacaccatgtatttttttccagctggtattattagtgttgacatccctgctgctttacacgcactgctaaatgc |
2562406 |
T |
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| Q |
211 |
actgacaaat |
220 |
Q |
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||| |||||| |
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| T |
2562405 |
actaacaaat |
2562396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 111 - 220
Target Start/End: Complemental strand, 2553749 - 2553640
Alignment:
| Q |
111 |
tgcaaggaccgctaaaacttagtttcgacaccataaatgtttttcctgctggtatgaccagtgttgacatctctgctgctttacacgcactactccatgc |
210 |
Q |
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| T |
2553749 |
tgcaacgaccactaaaatttgctttcgacaccatgtatttttttccagctggtattattagtgttgacatccctgctgctttacacgcactgctaaatgc |
2553650 |
T |
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| Q |
211 |
actgacaaat |
220 |
Q |
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||| |||||| |
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| T |
2553649 |
actaacaaat |
2553640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 213
Target Start/End: Complemental strand, 2549094 - 2548995
Alignment:
| Q |
111 |
tgcaaggaccgctaaaacttagtttcgacaccataaatgtttttcctgctggtatgaccagtgttgacatctctgctgctttacacgcactactccatgc |
210 |
Q |
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| T |
2549094 |
tgcaaggaccactaaaatgtattttcgacgccatgaatattttacctg---gtataactagtgttgacgtccctactgctttacaagcactactccatgc |
2548998 |
T |
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