View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1475_low_16 (Length: 223)

Name: NF1475_low_16
Description: NF1475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1475_low_16
NF1475_low_16
[»] chr8 (6 HSPs)
chr8 (1-208)||(30211751-30211958)
chr8 (89-150)||(27970884-27970945)
chr8 (89-150)||(28028153-28028214)
chr8 (89-150)||(27895533-27895594)
chr8 (89-150)||(27907772-27907833)
chr8 (89-150)||(27954191-27954252)
[»] chr7 (1 HSPs)
chr7 (80-135)||(38332284-38332339)


Alignment Details
Target: chr8 (Bit Score: 147; Significance: 1e-77; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 30211958 - 30211751
Alignment:
Q  1 ggagaggaagttccttggaagttagaagacacatgacattggtacaacttgtgagttattgttgnnnnnnngtccctatattgttagatcaaacttcata 100  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||         ||| |||||||||||||||||||||||||    
T  30211958 ggagaggaagttccttggaagttagaagacacatgaaattggtacaacttgtgagttattgtcttttatttgtctctatattgttagatcaaacttcata 30211859  T
Q  101 caaatgagttcatttttgttcgatgaaactatgcctaatagaaacacatcaaccctcaaaaaataagacttttactatattttacctttttgcatacatg 200  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||| |||||    
T  30211858 caaatgagttcatttttgttcgataaaactatgtctaatagaaacacatccaccctcaaaagataagactcttactatattttacctttttgcacacatg 30211759  T
Q  201 tgcctttg 208  Q
    ||||||||    
T  30211758 tgcctttg 30211751  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 150
Target Start/End: Original strand, 27970884 - 27970945
Alignment:
Q  89 tcaaacttcatacaaatgagttcatttttgttcgatgaaactatgcctaatagaaacacatc 150  Q
    ||||||| ||| ||||||||||| ||| |||||||| |||||||||||| ||||||||||||    
T  27970884 tcaaactccatgcaaatgagttcgtttctgttcgataaaactatgcctactagaaacacatc 27970945  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 150
Target Start/End: Original strand, 28028153 - 28028214
Alignment:
Q  89 tcaaacttcatacaaatgagttcatttttgttcgatgaaactatgcctaatagaaacacatc 150  Q
    ||||||| ||| ||||||||||| ||| |||||||| |||||||||||| ||||||||||||    
T  28028153 tcaaactccatgcaaatgagttcgtttctgttcgataaaactatgcctactagaaacacatc 28028214  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 150
Target Start/End: Original strand, 27895533 - 27895594
Alignment:
Q  89 tcaaacttcatacaaatgagttcatttttgttcgatgaaactatgcctaatagaaacacatc 150  Q
    ||||||| ||| ||||||||||| ||| | |||||  |||||||||||| ||||||||||||    
T  27895533 tcaaactccatgcaaatgagttcgtttctattcgacaaaactatgcctactagaaacacatc 27895594  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 150
Target Start/End: Original strand, 27907772 - 27907833
Alignment:
Q  89 tcaaacttcatacaaatgagttcatttttgttcgatgaaactatgcctaatagaaacacatc 150  Q
    ||||||| ||| ||||||||||| ||| | |||||  |||||||||||| ||||||||||||    
T  27907772 tcaaactccatgcaaatgagttcgtttctattcgacaaaactatgcctactagaaacacatc 27907833  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 150
Target Start/End: Original strand, 27954191 - 27954252
Alignment:
Q  89 tcaaacttcatacaaatgagttcatttttgttcgatgaaactatgcctaatagaaacacatc 150  Q
    ||||||| ||| ||||||||||| ||| | |||||  |||||||||||| ||||||||||||    
T  27954191 tcaaactccatgcaaatgagttcgtttctattcgacaaaactatgcctactagaaacacatc 27954252  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 135
Target Start/End: Complemental strand, 38332339 - 38332284
Alignment:
Q  80 attgttagatcaaacttcatacaaatgagttcatttttgttcgatgaaactatgcc 135  Q
    ||||| |||||||||||||| ||||| |||| ||||||||| ||| ||||||||||    
T  38332339 attgtaagatcaaacttcatgcaaataagttgatttttgtttgataaaactatgcc 38332284  T

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