View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1475_low_17 (Length: 218)
Name: NF1475_low_17
Description: NF1475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1475_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 125; Significance: 1e-64; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 15 - 160
Target Start/End: Complemental strand, 25274796 - 25274650
Alignment:
| Q |
15 |
agagatttcagacccaa--ggatttttccctttttataacattttcataaatagatatgtgcataagagcaactaataaatattatgataatttccatat |
112 |
Q |
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| T |
25274796 |
agagatttcagacccaataggatttttccctttttataacattttcataaatagatatgtgcataagagcaactaataaatattatgataatttccatat |
25274697 |
T |
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| Q |
113 |
atgaatatattgttgtccttgttcgcaccatttgaaattgttgacact |
160 |
Q |
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| T |
25274696 |
atgaatatattgttgtccttgtttgcaccatttgaaa-tgttgacact |
25274650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 156 - 202
Target Start/End: Complemental strand, 25262240 - 25262194
Alignment:
| Q |
156 |
acactgttataagaattgttaccatttcttttttgctgactcttatt |
202 |
Q |
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| T |
25262240 |
acactgttataagaattgttaccatttcttttttgctgactcttatt |
25262194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 202
Target Start/End: Original strand, 25277201 - 25277350
Alignment:
| Q |
50 |
aacattttcataaatagatatgtgcataagagcaactaataaatattatgataatttccatatatgaatatattgttgtccttgttcgcaccatttgaaa |
149 |
Q |
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| T |
25277201 |
aacattttcataaacagatatttgcataggagcagctgcacaatatt--gatagtttccatttaggaacatattattgtcattgttcacaccatatgaaa |
25277298 |
T |
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| Q |
150 |
ttgttgacactgttataagaattgttaccatttcttttttgctgactcttatt |
202 |
Q |
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| T |
25277299 |
t-gttaaccctgctagaagaagtgttaccatttctttttttccgacttttatt |
25277350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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