View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1475_low_4 (Length: 371)
Name: NF1475_low_4
Description: NF1475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1475_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 73 - 361
Target Start/End: Complemental strand, 52637769 - 52637501
Alignment:
| Q |
73 |
agtgaattgataaattgattcttaaaatggtaacaaccagtaaaaatagttgtatatcttttgtattttcgttaaagactatgacattataggttatact |
172 |
Q |
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| T |
52637769 |
agtgaattgataaattgattcttaaaatggtaagaaccagtaaaaatagttgtatattttttgtattttcgttaaagactatgacattataggttatact |
52637670 |
T |
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| Q |
173 |
tcataatgatttcacgtcaatatcatctcaccggcggttaatgtatctatgcaatttagataatcttggtgaaaatccgttggcaattgcaattatatat |
272 |
Q |
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||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52637669 |
tcataatgatttcacgtcaatatcatctcaccgacggctaatgtatctatgcaatttagataatcttggtgaaaatccgttggcaattgcaattatatat |
52637570 |
T |
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| Q |
273 |
ggactaattactttatatatggactaattgttgacacattagttcgtgagatgtataaattttataagcaaattagtccctgatgatgt |
361 |
Q |
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| T |
52637569 |
ggact--------------------aattgttgacacattagtttgtgagatgtataaattttataagcaaattagtccctggtgatgt |
52637501 |
T |
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