View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1475_low_9 (Length: 291)

Name: NF1475_low_9
Description: NF1475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1475_low_9
NF1475_low_9
[»] chr8 (2 HSPs)
chr8 (14-275)||(35686147-35686410)
chr8 (131-273)||(35680889-35681033)
[»] chr3 (9 HSPs)
chr3 (18-113)||(23669175-23669268)
chr3 (18-113)||(24041451-24041544)
chr3 (186-256)||(23669475-23669545)
chr3 (186-256)||(24041751-24041821)
chr3 (199-273)||(23685171-23685245)
chr3 (199-273)||(24057408-24057482)
chr3 (210-254)||(23674227-23674271)
chr3 (210-254)||(24046503-24046547)
chr3 (164-248)||(52548627-52548711)


Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 14 - 275
Target Start/End: Complemental strand, 35686410 - 35686147
Alignment:
Q  14 gaacatttgcagagtggagatatttgagacctaggagtagctaaaataagagtttatgattagtaacaatcacaaggatatgtaaagtaagcaaatattt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35686410 gaacatttgcagagtggagatatttgagacctaggagtagctaaaataagagtttatgattagtaacaatcacaaggatatgtaaagtaagcaaatattt 35686311  T
Q  114 gaaatatcataacaagactaattagtacccgaaac--aaaatatctgcaaatatcattagaaagtgactgagcagactttataatctgatgaagatctgt 211  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  35686310 gaaatatcataacaagactaattagtacccgaaacaaaaaatatctgcaaatatcattagaaagtgactgagcggactttataatctgatgaagatctgt 35686211  T
Q  212 atccatgagttcataaaccaagtagacatccttaaaacttgttctatgcaccggcatcataaat 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  35686210 atccatgagttcataaaccaagtagacatccttaaaacttgttctatgtaccggcatcataaat 35686147  T

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Target: chr8; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 131 - 273
Target Start/End: Complemental strand, 35681033 - 35680889
Alignment:
Q  131 ctaattagtacccgaaacaa--aatatctgcaaatatcattagaaagtgactgagcagactttataatctgatgaagatctgtatccatgagttcataaa 228  Q
    |||||||||||| |||||||  ||||| |||||  |||||||||||||| ||||| |||||| ||||| |||||||||||||| ||||||||||||||||    
T  35681033 ctaattagtacctgaaacaagaaatatttgcaatgatcattagaaagtggctgagtagacttgataatttgatgaagatctgtttccatgagttcataaa 35680934  T
Q  229 ccaagtagacatccttaaaacttgttctatgcaccggcatcataa 273  Q
    ||||||||||||||||||||||||||||||| |||||||||||||    
T  35680933 ccaagtagacatccttaaaacttgttctatgtaccggcatcataa 35680889  T

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Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 23669175 - 23669268
Alignment:
Q  18 atttgcagagtggagatatttgagacctaggagtagctaaaataagagtttatgattagtaacaatcacaaggatatgtaaagtaagcaaatattt 113  Q
    ||||||||| |||||||| || |||||| | |||| || ||||||||||||||||||||||||||  |||||||||||| || |||||||||||||    
T  23669175 atttgcagaatggagataattaagaccttgaagtaactgaaataagagtttatgattagtaacaa--acaaggatatgttaaataagcaaatattt 23669268  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 24041451 - 24041544
Alignment:
Q  18 atttgcagagtggagatatttgagacctaggagtagctaaaataagagtttatgattagtaacaatcacaaggatatgtaaagtaagcaaatattt 113  Q
    ||||||||| |||||||| || |||||| | |||| || ||||||||||||||||||||||||||  |||||||||||| || |||||||||||||    
T  24041451 atttgcagaatggagataattaagaccttgaagtaactgaaataagagtttatgattagtaacaa--acaaggatatgttaaataagcaaatattt 24041544  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 186 - 256
Target Start/End: Original strand, 23669475 - 23669545
Alignment:
Q  186 gactttataatctgatgaagatctgtatccatgagttcataaaccaagtagacatccttaaaacttgttct 256  Q
    ||||| |||||  ||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  23669475 gacttgataatacgatgaaggtctttatccatgagttcatagaccaagtagacatccttaaaacttgttct 23669545  T

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Target: chr3; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 186 - 256
Target Start/End: Original strand, 24041751 - 24041821
Alignment:
Q  186 gactttataatctgatgaagatctgtatccatgagttcataaaccaagtagacatccttaaaacttgttct 256  Q
    ||||| |||||  ||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  24041751 gacttgataatacgatgaaggtctttatccatgagttcatagaccaagtagacatccttaaaacttgttct 24041821  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 199 - 273
Target Start/End: Original strand, 23685171 - 23685245
Alignment:
Q  199 gatgaagatctgtatccatgagttcataaaccaagtagacatccttaaaacttgttctatgcaccggcatcataa 273  Q
    ||||||||||| ||||||||| |||||| |||||||||| |||||||||||||||||| ||  |||| |||||||    
T  23685171 gatgaagatctttatccatgaattcatagaccaagtagatatccttaaaacttgttctttggtccggtatcataa 23685245  T

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Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 199 - 273
Target Start/End: Original strand, 24057408 - 24057482
Alignment:
Q  199 gatgaagatctgtatccatgagttcataaaccaagtagacatccttaaaacttgttctatgcaccggcatcataa 273  Q
    ||||||||||| ||||||||| |||||| |||||||||| |||||||||||||||||| ||  |||| |||||||    
T  24057408 gatgaagatctttatccatgaattcatagaccaagtagatatccttaaaacttgttctttggtccggtatcataa 24057482  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 254
Target Start/End: Original strand, 23674227 - 23674271
Alignment:
Q  210 gtatccatgagttcataaaccaagtagacatccttaaaacttgtt 254  Q
    |||||||| |||||||| |||||||||||||||||||||| ||||    
T  23674227 gtatccattagttcatagaccaagtagacatccttaaaacatgtt 23674271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 254
Target Start/End: Original strand, 24046503 - 24046547
Alignment:
Q  210 gtatccatgagttcataaaccaagtagacatccttaaaacttgtt 254  Q
    |||||||| |||||||| |||||||||||||||||||||| ||||    
T  24046503 gtatccattagttcatagaccaagtagacatccttaaaacatgtt 24046547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 248
Target Start/End: Complemental strand, 52548711 - 52548627
Alignment:
Q  164 atcattagaaagtgactgagcagactttataatctgatgaagatctgtatccatgagttcataaaccaagtagacatccttaaaa 248  Q
    ||||||||||||||  || | |||||| ||||||||||| | ||| || ||||||||||||||||| |  || ||||||||||||    
T  52548711 atcattagaaagtgcttgggaagacttaataatctgatgcaaatcggtgtccatgagttcataaacaagataaacatccttaaaa 52548627  T

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