View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14760_low_1 (Length: 526)
Name: NF14760_low_1
Description: NF14760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14760_low_1 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 489; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 19 - 526
Target Start/End: Complemental strand, 41673753 - 41673245
Alignment:
| Q |
19 |
aatgggccaatcctcaacaccagcacccaatatccgtttagattgaaggcgaatcccgttaatttttgggcttgggcttcttgtgattggatgagcagca |
118 |
Q |
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| T |
41673753 |
aatgggccaatcctcaacaccagcacccaatatccgtttagattgaaggcgaatcccgttaatttttgggcttgggcttcttgtaattggatgagcagca |
41673654 |
T |
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| Q |
119 |
gtggccccaccacagccagatgaatcatagcccagcccagtaggaggactccgtgctgacaagctccaataagacccaaacgacgcccgatgctttgatg |
218 |
Q |
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| T |
41673653 |
gtggccccaccagagccagatgaatcatagcccagcccagtaggaggactccgtgctgacaagctccaataagacccaaacgacgcccgatgctttgatg |
41673554 |
T |
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| Q |
219 |
ggccttgactcttaatcttggcctttgcagactgtgttggggccatatagctaggtacacctccactgtggtgtcgttggtggtg-ttagagattggact |
317 |
Q |
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| T |
41673553 |
ggccttgacttttaatcttggcctttgcagactgtgttggggccatatagctaggtacacctccactgtggtgtcgttggtggtgtttagagattggact |
41673454 |
T |
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| Q |
318 |
taaatcacgaaattcttggttcatgaggcccatgtttgcatggattgagtctcgtggtgcaaccatgtccatttcaactgttttttcttcagacatgtca |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41673453 |
taaatcacgaaattcttggttcatgaggcccatgtttgcatggattgagtctcgtggtgcaaccatgtccatttcaactgttttttcttcagacatgtca |
41673354 |
T |
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| Q |
418 |
tcagtgggtgtatatggtggggtctcaagtggccccaaccctaagggcctaacattgtttgattgtgataacatccaacgttccaaccagttccaatcca |
517 |
Q |
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| T |
41673353 |
tcagtgggtgtatatggtggggtctcaagtggccccaaccctaagggcctaacattgtttgattgtgataacatccaacgttccaaccagttccaatcca |
41673254 |
T |
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| Q |
518 |
attgggctc |
526 |
Q |
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| T |
41673253 |
attgggctc |
41673245 |
T |
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