View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14760_low_2 (Length: 454)

Name: NF14760_low_2
Description: NF14760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14760_low_2
NF14760_low_2
[»] chr4 (3 HSPs)
chr4 (11-439)||(43396866-43397292)
chr4 (146-199)||(27131678-27131731)
chr4 (146-209)||(7422153-7422216)
[»] chr5 (5 HSPs)
chr5 (353-418)||(32358539-32358605)
chr5 (148-194)||(18542218-18542264)
chr5 (146-194)||(12976658-12976706)
chr5 (148-216)||(28735820-28735887)
chr5 (247-287)||(38713335-38713375)
[»] chr6 (2 HSPs)
chr6 (146-199)||(2468478-2468531)
chr6 (154-202)||(10338607-10338655)
[»] chr1 (2 HSPs)
chr1 (145-218)||(36552252-36552325)
chr1 (152-193)||(2445459-2445500)
[»] chr8 (1 HSPs)
chr8 (158-199)||(18992471-18992512)
[»] chr7 (1 HSPs)
chr7 (336-436)||(31317819-31317920)


Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 11 - 439
Target Start/End: Complemental strand, 43397292 - 43396866
Alignment:
Q  11 gagatgaactaagaagtttgaaatagttcgataaa--------tgattcaaattccgactgttaacataacatactaaaatcctatatggcccctacact 102  Q
    |||||||||||||||||||||||||||||||||||        ||||||||||||||||| ||||||||||||||||||||||||||||| ||    |||    
T  43397292 gagatgaactaagaagtttgaaatagttcgataaagagatatatgattcaaattccgactattaacataacatactaaaatcctatatggtcc----act 43397197  T
Q  103 tcagattgaaaatatgttcgtgtctgacggaattggtgtacaacaacacatgtgattacattcaattactactattttcttaaat-gattactaatgttt 201  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  43397196 tcagattgaaaatatgttcgtgtccgacggaattggtgtacaacaacacatgtgattacattcaattactgctattttcttaaattgattactaatgttt 43397097  T
Q  202 atgtgtcattgtcgtatctgtgtcnnnnnnnctagagtaaagacacaatttagtctctcacaattttatcacggtctaatttaatccattacttnnnnnn 301  Q
    ||||||||||||       |||||       ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||          
T  43397096 atgtgtcattgt-------gtgtcaaaaaaactagagtaaagacacaatttagtctctcacaattttatcacggcctagtttaatccattacttaaaaaa 43397004  T
Q  302 ncattaaagtagtccttgatattttcaaactggagacaaattagtcctgaactcattataacagaggatttatttatcttcaatttgaaaatgtcaatga 401  Q
     |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||  |||||| |||||||||||||||||||||||||||||||    
T  43397003 acattaaagtagtccttgatattttcaaactggggataaattagtcctgaactcattatacaagaggacttatttatcttcaatttgaaaatgtcaatga 43396904  T
Q  402 ctagtttggtattatttcttctcggagactaaattggt 439  Q
    ||||||||||||||||||||||||||||||||||||||    
T  43396903 ctagtttggtattatttcttctcggagactaaattggt 43396866  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 146 - 199
Target Start/End: Original strand, 27131678 - 27131731
Alignment:
Q  146 caacacatgtgattacattcaattactactattttcttaaatgattactaatgt 199  Q
    ||||||||||| ||||||||||||||| | |||||||||||| ||||| |||||    
T  27131678 caacacatgtggttacattcaattacttccattttcttaaattattaccaatgt 27131731  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 209
Target Start/End: Complemental strand, 7422216 - 7422153
Alignment:
Q  146 caacacatgtgattacattcaattactactattttcttaaatgattactaatgtttatgtgtca 209  Q
    |||||||| | |||||||||||| ||| ||||||||| |||| ||||| ||||| |||||||||    
T  7422216 caacacatataattacattcaatcacttctattttctcaaattattacaaatgtctatgtgtca 7422153  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 418
Target Start/End: Complemental strand, 32358605 - 32358539
Alignment:
Q  353 ctcattataacagagg-atttatttatcttcaatttgaaaatgtcaatgactagtttggtattattt 418  Q
    |||||||||||||||| | |||||| ||  ||||||||||||||||| | |||||||||||||||||    
T  32358605 ctcattataacagagggacttatttgtccccaatttgaaaatgtcaagggctagtttggtattattt 32358539  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 148 - 194
Target Start/End: Original strand, 18542218 - 18542264
Alignment:
Q  148 acacatgtgattacattcaattactactattttcttaaatgattact 194  Q
    |||||||||||||||||||||||||  |||||||| |||| ||||||    
T  18542218 acacatgtgattacattcaattacttgtattttctcaaattattact 18542264  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 194
Target Start/End: Original strand, 12976658 - 12976706
Alignment:
Q  146 caacacatgtgattacattcaattactactattttcttaaatgattact 194  Q
    ||||||||||||||||||||| | |||  ||||||||||||| ||||||    
T  12976658 caacacatgtgattacattcattgacttttattttcttaaattattact 12976706  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 148 - 216
Target Start/End: Original strand, 28735820 - 28735887
Alignment:
Q  148 acacatgtgattacattcaattactactattttcttaaatgattactaatgtttatgtgtcattgtcgt 216  Q
    |||||| | |||||||||||| ||| |||||||||||||| ||||| | ||| ||||||||| ||||||    
T  28735820 acacatataattacattcaatcacttctattttcttaaattattac-agtgtctatgtgtcagtgtcgt 28735887  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 287
Target Start/End: Complemental strand, 38713375 - 38713335
Alignment:
Q  247 caatttagtctctcacaattttatcacggtctaatttaatc 287  Q
    ||||||| ||||||||||||||||||||||| |||| ||||    
T  38713375 caatttaatctctcacaattttatcacggtccaattcaatc 38713335  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 146 - 199
Target Start/End: Original strand, 2468478 - 2468531
Alignment:
Q  146 caacacatgtgattacattcaattactactattttcttaaatgattactaatgt 199  Q
    ||||||||||| ||||||||||||||| | |||||||||||| ||||| |||||    
T  2468478 caacacatgtggttacattcaattacttccattttcttaaattattaccaatgt 2468531  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 10338655 - 10338607
Alignment:
Q  154 gtgattacattcaattactactattttcttaaatgattactaatgttta 202  Q
    ||||||||||||||| ||| |||||||||||||| ||||  ||||||||    
T  10338655 gtgattacattcaatcacttctattttcttaaattattatcaatgttta 10338607  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 145 - 218
Target Start/End: Original strand, 36552252 - 36552325
Alignment:
Q  145 acaacacatgtgattacattcaattactactattttcttaaatgattactaatgtttatgtgtcattgtcgtat 218  Q
    |||||||| |||||| ||||||| || | || |||| || |||||||||| |||| ||||||||||||||||||    
T  36552252 acaacacacgtgatttcattcaagtatttctgttttttttaatgattacttatgtctatgtgtcattgtcgtat 36552325  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 193
Target Start/End: Original strand, 2445459 - 2445500
Alignment:
Q  152 atgtgattacattcaattactactattttcttaaatgattac 193  Q
    ||||||||||||||||| ||| | ||||||||||||||||||    
T  2445459 atgtgattacattcaatcacttccattttcttaaatgattac 2445500  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 199
Target Start/End: Original strand, 18992471 - 18992512
Alignment:
Q  158 ttacattcaattactactattttcttaaatgattactaatgt 199  Q
    |||||||||||||||| |||||||| |||| |||||||||||    
T  18992471 ttacattcaattactattattttctaaaattattactaatgt 18992512  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 436
Target Start/End: Complemental strand, 31317920 - 31317819
Alignment:
Q  336 gacaaattagtcctgaactcattataacaga-ggatttatttatcttcaatttgaaaatgtcaatgactagtttggtattatttcttctcggagactaaa 434  Q
    |||| ||||||||||  |||||||||||| | ||| | |||| ||  || ||| |||||||||  ||||||||||||||||||| || |||| |||||||    
T  31317920 gacagattagtcctggcctcattataacaaaaggactaatttgtccccatttttaaaatgtcagggactagtttggtattattttttgtcggggactaaa 31317821  T
Q  435 tt 436  Q
    ||    
T  31317820 tt 31317819  T

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