View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14760_low_5 (Length: 262)
Name: NF14760_low_5
Description: NF14760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14760_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 100 - 244
Target Start/End: Original strand, 46482876 - 46483020
Alignment:
| Q |
100 |
gttgaccgcatagcttacatccatcacatcgtggattccggtcagaaggagattttattaagtgacggaaaattcgtgatgcattctcgagataaggtat |
199 |
Q |
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| T |
46482876 |
gttgaccgcatagcttacacccatcacatcgtggattccggtcagaaagagattttattaaatgacggaaaatttgtgatgcattctcgagataaggtat |
46482975 |
T |
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| Q |
200 |
cacaataaatagcattgttgattatataatgttcaatgagaagtc |
244 |
Q |
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| T |
46482976 |
cacaataaatagcattgttgatcatataatgttcaatgagaagtc |
46483020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 46482791 - 46482855
Alignment:
| Q |
13 |
atgattgggtttcgaaccccgattcctctacttatattgtgagtttttaatgactttatcattttgtttatct |
85 |
Q |
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| T |
46482791 |
atgattgggtttcgaaccccgattcctctac--------tgagtttttaatgattttatcattttgtttatct |
46482855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 36752412 - 36752485
Alignment:
| Q |
13 |
atgattgggtttcgaaccccgattcctctacttatat-tgtgagtttttaatgactttatcattttgtttatct |
85 |
Q |
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| T |
36752412 |
atgatcggggttcgaaccccgatacctccacttatatatgtgagtttataatggctttgtcatttcgtctatct |
36752485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 3048595 - 3048668
Alignment:
| Q |
13 |
atgattgggtttcgaaccccgattcctctacttatat-tgtgagtttttaatgactttatcattttgtttatct |
85 |
Q |
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| T |
3048595 |
atgatcggggttcgaaccccggtacctccacttatgtgtgtgagtttttaatggctttatcatttcgtctatct |
3048668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 85
Target Start/End: Complemental strand, 30854808 - 30854748
Alignment:
| Q |
26 |
gaaccccgattcctctacttatat-tgtgagtttttaatgactttatcattttgtttatct |
85 |
Q |
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| T |
30854808 |
gaaccccgactcatccacttatatgtgtgagtttctaataactttatcatttcgtttatct |
30854748 |
T |
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