View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14761_low_10 (Length: 231)
Name: NF14761_low_10
Description: NF14761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14761_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 87; Significance: 8e-42; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 7 - 110
Target Start/End: Complemental strand, 41671067 - 41670962
Alignment:
| Q |
7 |
cacagatctgaagccccaatgaacttcaagaaacttaacataatcacacatagttaaag--agacaaaataattagttcatcaaatcatcttaacttatc |
104 |
Q |
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| T |
41671067 |
cacagatctgaagccccaatgaacttcaagaaacttaacatgatcacacatatttaaagatagacaaaataattagttcatcaaatcatcttaacttatc |
41670968 |
T |
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| Q |
105 |
acaata |
110 |
Q |
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| T |
41670967 |
acaata |
41670962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 149 - 231
Target Start/End: Complemental strand, 41670968 - 41670886
Alignment:
| Q |
149 |
cacaattttaaagaaatataaaccagttttgatgactgattgcaacaagggtgagcacaagagaagaacaaacacaacaacta |
231 |
Q |
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| T |
41670968 |
cacaatattaaagaaatataaaccagttttgatgactgattgcagcaagggtgagcacaagagaagaacaaacacaacaacta |
41670886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 126 - 192
Target Start/End: Complemental strand, 40810470 - 40810405
Alignment:
| Q |
126 |
aaactatacaaaacataaattaccacaattttaaagaaatataaaccagttttgatgactgattgca |
192 |
Q |
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||||||| |||||||||||||| || |||||||| |||| |||||| ||||| |||||||||||||| |
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| T |
40810470 |
aaactatgcaaaacataaattagcataattttaatgaaa-ataaactagtttcgatgactgattgca |
40810405 |
T |
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