View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14761_low_5 (Length: 373)

Name: NF14761_low_5
Description: NF14761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14761_low_5
NF14761_low_5
[»] chr5 (8 HSPs)
chr5 (19-367)||(9002759-9003106)
chr5 (92-187)||(6296868-6296964)
chr5 (99-204)||(10635301-10635408)
chr5 (97-187)||(29814916-29815007)
chr5 (92-151)||(39107795-39107854)
chr5 (92-129)||(29859287-29859324)
chr5 (99-131)||(33674811-33674843)
chr5 (92-132)||(37322403-37322443)
[»] chr4 (7 HSPs)
chr4 (99-197)||(38020378-38020478)
chr4 (92-127)||(27112402-27112437)
chr4 (93-139)||(33801901-33801947)
chr4 (101-134)||(44286936-44286969)
chr4 (92-137)||(51421449-51421494)
chr4 (157-209)||(2097077-2097129)
chr4 (159-203)||(29728814-29728858)
[»] chr8 (5 HSPs)
chr8 (93-137)||(16622593-16622637)
chr8 (98-129)||(23689578-23689609)
chr8 (93-152)||(10995395-10995456)
chr8 (99-129)||(12165705-12165735)
chr8 (99-129)||(12410133-12410163)
[»] chr1 (11 HSPs)
chr1 (97-153)||(42535734-42535790)
chr1 (92-153)||(32398771-32398832)
chr1 (200-246)||(5130317-5130363)
chr1 (92-129)||(15535644-15535681)
chr1 (93-203)||(36472599-36472710)
chr1 (92-134)||(18635664-18635706)
chr1 (92-129)||(22544581-22544618)
chr1 (92-129)||(28308384-28308421)
chr1 (99-127)||(10799276-10799304)
chr1 (92-139)||(43534637-43534685)
chr1 (100-128)||(51697570-51697598)
[»] chr2 (10 HSPs)
chr2 (92-202)||(1652535-1652646)
chr2 (92-129)||(5251412-5251449)
chr2 (92-131)||(10223394-10223433)
chr2 (93-131)||(7648722-7648760)
chr2 (93-127)||(25728080-25728114)
chr2 (93-185)||(41508140-41508234)
chr2 (99-139)||(13336239-13336279)
chr2 (157-197)||(14195204-14195244)
chr2 (103-139)||(18283819-18283855)
chr2 (112-203)||(32103577-32103669)
[»] chr3 (7 HSPs)
chr3 (93-187)||(50574742-50574840)
chr3 (92-127)||(48308089-48308124)
chr3 (92-126)||(40111767-40111801)
chr3 (98-141)||(54913673-54913718)
chr3 (93-126)||(10428021-10428054)
chr3 (94-130)||(32027253-32027289)
chr3 (91-127)||(41737939-41737975)
[»] chr7 (7 HSPs)
chr7 (98-203)||(33084908-33085015)
chr7 (93-127)||(37829999-37830033)
chr7 (93-149)||(7879048-7879105)
chr7 (95-153)||(35451129-35451188)
chr7 (93-131)||(31939655-31939693)
chr7 (93-203)||(40778180-40778286)
chr7 (92-132)||(37882926-37882966)
[»] chr6 (8 HSPs)
chr6 (93-187)||(31957893-31957988)
chr6 (93-131)||(3535261-3535299)
chr6 (98-131)||(23402904-23402937)
chr6 (92-127)||(2477285-2477320)
chr6 (92-137)||(7099695-7099741)
chr6 (92-137)||(8794889-8794935)
chr6 (99-127)||(3004848-3004876)
chr6 (100-132)||(30851475-30851507)
[»] scaffold0179 (1 HSPs)
scaffold0179 (92-131)||(31014-31053)
[»] scaffold0071 (1 HSPs)
scaffold0071 (93-127)||(63452-63486)


Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 19 - 367
Target Start/End: Complemental strand, 9003106 - 9002759
Alignment:
Q  19 ctcatcacctaaggttgtcatgtttgatcaatcaattgattttacaactaatctattcatgnnnnnnnnnnngtaatgacaaatgttagtaattagttgt 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||    
T  9003106 ctcatcacctaaggttgtcatgtttgatcaatcaattgattttacaactaatctattcatgtttttttttt-gtaatgacaaatgttagtaattagttgt 9003008  T
Q  119 tagattaatttttctccttcgcttgggtttgaaccggtacctccaactcctcaacccttagctcaaacctgttcagctatccaactaatctatttatggt 218  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9003007 tagattagtttttctccttcgcttgggtttgaaccggtacctccaactcctcaacccttagctcaaacctgttcagctatccaactaatctatttatggt 9002908  T
Q  219 gctgtttatatttgttataattttagttgctttttgttatctaccacatttaattatatcttagctctcactgttaatgnnnnnnnctcatgtggcccca 318  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||    
T  9002907 gttgtttatatttgttataattttagttgctttttgttatctaccacatttaattatatcttagctctcactgttaatgaaaaaaactcatgtggcccca 9002808  T
Q  319 atctttcattactaatttcatcgtagaaacttcctttttaccttctgtg 367  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  9002807 atctttcattactaatttcatcgtagaaacttcctttttaccttctgtg 9002759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 92 - 187
Target Start/End: Complemental strand, 6296964 - 6296868
Alignment:
Q  92 taatgacaaatgttagtaattagttgttagattaatttttctccttcgcttgggtttgaa-ccggtacctccaactcctcaacccttagctcaaacc 187  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||| |  |||||||||| || | ||||||||||||| | |||||||||||||||    
T  6296964 taatggcaaatgttagtaattagttgttagattagtttttctcctttgtctgggtttgaacccagaacctccaactccttatcccttagctcaaacc 6296868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 99 - 204
Target Start/End: Original strand, 10635301 - 10635408
Alignment:
Q  99 aaatgttagtaattagttgttagattaattttt-ctccttcgcttgggtttgaa-ccggtacctccaactcctcaacccttagctcaaacctgttcagct 196  Q
    |||||||||||||||||| |||||| | ||||| |||||||||  ||||||||| || | ||||||||||||| | ||||||||||||||| ||| ||||    
T  10635301 aaatgttagtaattagttcttagatcatttttttctccttcgcccgggtttgaagccaggacctccaactccttatcccttagctcaaaccagttgagct 10635400  T
Q  197 atccaact 204  Q
    | ||||||    
T  10635401 acccaact 10635408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 187
Target Start/End: Original strand, 29814916 - 29815007
Alignment:
Q  97 acaaatgttagtaattagttgttagattaatttttctccttcgcttgggtttgaacc-ggtacctccaactcctcaacccttagctcaaacc 187  Q
    ||||||||||||||||| |||||| |||| ||||||||||| | |  ||||||||||  | ||||||||||||| | |||||||||||||||    
T  29814916 acaaatgttagtaattatttgttacattagtttttctcctttgttcaggtttgaacctaggacctccaactccttatcccttagctcaaacc 29815007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 92 - 151
Target Start/End: Complemental strand, 39107854 - 39107795
Alignment:
Q  92 taatgacaaatgttagtaattagttgttagattaatttttctccttcgcttgggtttgaa 151  Q
    ||||| ||||||||||||||||||||||||| || ||||||||||||  |||||||||||    
T  39107854 taatggcaaatgttagtaattagttgttagaatagtttttctccttcagttgggtttgaa 39107795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 92 - 129
Target Start/End: Complemental strand, 29859324 - 29859287
Alignment:
Q  92 taatgacaaatgttagtaattagttgttagattaattt 129  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  29859324 taatgtcaaatgttagtaattagttgttagattaattt 29859287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 131
Target Start/End: Complemental strand, 33674843 - 33674811
Alignment:
Q  99 aaatgttagtaattagttgttagattaattttt 131  Q
    |||||||||||||||||||||||||||||||||    
T  33674843 aaatgttagtaattagttgttagattaattttt 33674811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 132
Target Start/End: Original strand, 37322403 - 37322443
Alignment:
Q  92 taatgacaaatgttagtaattagttgttagattaatttttc 132  Q
    |||||| |||||||||||||||||||||| |||||||||||    
T  37322403 taatgataaatgttagtaattagttgttaaattaatttttc 37322443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 99 - 197
Target Start/End: Complemental strand, 38020478 - 38020378
Alignment:
Q  99 aaatgttagtaattagttgttagattaattttt-ctccttcgcttgggtttgaaccg-gtacctccaactcctcaacccttagctcaaacctgttcagct 196  Q
    ||||||||||||| ||||||||||||||| ||| ||||||||   |||||||||||  | ||||||||||||| ||||||||||||||||| ||| ||||    
T  38020478 aaatgttagtaatcagttgttagattaatatttactccttcgtccgggtttgaaccttggacctccaactccttaacccttagctcaaaccagttgagct 38020379  T
Q  197 a 197  Q
    |    
T  38020378 a 38020378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 92 - 127
Target Start/End: Original strand, 27112402 - 27112437
Alignment:
Q  92 taatgacaaatgttagtaattagttgttagattaat 127  Q
    |||||||||||||||||||||| |||||||||||||    
T  27112402 taatgacaaatgttagtaattaattgttagattaat 27112437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 139
Target Start/End: Original strand, 33801901 - 33801947
Alignment:
Q  93 aatgacaaatgttagtaattagttgttagattaatttttctccttcg 139  Q
    |||||| ||| |||||||||||||||||||||| ||||| |||||||    
T  33801901 aatgaccaatattagtaattagttgttagattactttttttccttcg 33801947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 134
Target Start/End: Complemental strand, 44286969 - 44286936
Alignment:
Q  101 atgttagtaattagttgttagattaatttttctc 134  Q
    |||||||||||| |||||||||||||||||||||    
T  44286969 atgttagtaatttgttgttagattaatttttctc 44286936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 51421449 - 51421494
Alignment:
Q  92 taatgacaaatgttagtaattagttgttagattaatttttctcctt 137  Q
    ||||||||| |||||||||||| |||||| |||| |||||||||||    
T  51421449 taatgacaactgttagtaattaattgttatattagtttttctcctt 51421494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 2097129 - 2097077
Alignment:
Q  157 acctccaactcctcaacccttagctcaaacctgttcagctatccaactaatct 209  Q
    ||||||||||||| ||||||||||||||||  ||| ||||| ||||| |||||    
T  2097129 acctccaactccttaacccttagctcaaactagttgagctacccaaccaatct 2097077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 29728814 - 29728858
Alignment:
Q  159 ctccaactcctcaacccttagctcaaacctgttcagctatccaac 203  Q
    ||||||||||| ||||||||||||||||| ||| ||||| |||||    
T  29728814 ctccaactccttaacccttagctcaaaccagttgagctacccaac 29728858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 93 - 137
Target Start/End: Original strand, 16622593 - 16622637
Alignment:
Q  93 aatgacaaatgttagtaattagttgttagattaatttttctcctt 137  Q
    ||||||||||||||||||||||||||||||||| |||||||||||    
T  16622593 aatgacaaatgttagtaattagttgttagattagtttttctcctt 16622637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 98 - 129
Target Start/End: Original strand, 23689578 - 23689609
Alignment:
Q  98 caaatgttagtaattagttgttagattaattt 129  Q
    ||||||||||||||||||||||||||||||||    
T  23689578 caaatgttagtaattagttgttagattaattt 23689609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 152
Target Start/End: Complemental strand, 10995456 - 10995395
Alignment:
Q  93 aatgacaaatgttagtaattagttgttagattaa--tttttctccttcgcttgggtttgaac 152  Q
    |||| |||||||||||  ||||||||| ||||||  |||||||||||||| |||||||||||    
T  10995456 aatggcaaatgttagtggttagttgttggattaaattttttctccttcgcctgggtttgaac 10995395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 129
Target Start/End: Original strand, 12165705 - 12165735
Alignment:
Q  99 aaatgttagtaattagttgttagattaattt 129  Q
    |||||||||||||||||||||||||||||||    
T  12165705 aaatgttagtaattagttgttagattaattt 12165735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 129
Target Start/End: Original strand, 12410133 - 12410163
Alignment:
Q  99 aaatgttagtaattagttgttagattaattt 129  Q
    |||||||||||||||||||||||||||||||    
T  12410133 aaatgttagtaattagttgttagattaattt 12410163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 97 - 153
Target Start/End: Complemental strand, 42535790 - 42535734
Alignment:
Q  97 acaaatgttagtaattagttgttagattaatttttctccttcgcttgggtttgaacc 153  Q
    ||||||||||||||||||||||||||||  ||||||| ||||| |||||||||||||    
T  42535790 acaaatgttagtaattagttgttagattcgtttttcttcttcgtttgggtttgaacc 42535734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 153
Target Start/End: Complemental strand, 32398832 - 32398771
Alignment:
Q  92 taatgacaaatgttagtaattagttgttagattaatttttctccttcgcttgggtttgaacc 153  Q
    ||||| ||||| |||||||||||||||||||||| |||||||||||||  || |||||||||    
T  32398832 taatggcaaatattagtaattagttgttagattagtttttctccttcgtctgagtttgaacc 32398771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 246
Target Start/End: Complemental strand, 5130363 - 5130317
Alignment:
Q  200 caactaatctatttatggtgctgtttatatttgttataattttagtt 246  Q
    ||||||||||||| |||||| |||||||||||||||||| |||||||    
T  5130363 caactaatctattgatggtgttgtttatatttgttataactttagtt 5130317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 92 - 129
Target Start/End: Original strand, 15535644 - 15535681
Alignment:
Q  92 taatgacaaatgttagtaattagttgttagattaattt 129  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  15535644 taatgtcaaatgttagtaattagttgttagattaattt 15535681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 203
Target Start/End: Original strand, 36472599 - 36472710
Alignment:
Q  93 aatgacaaatgttagtaattagttgttagattaatttttc-tccttcgcttgggtttgaaccg-gtacctccaactcctcaacccttagctcaaacctgt 190  Q
    ||||||| ||||||||| ||||||||||||||| |||||| ||||| |   |||||||||||  | ||||||||||||| | ||||||||||| ||| ||    
T  36472599 aatgacagatgttagta-ttagttgttagattagtttttcctcctttgtccgggtttgaacccaggacctccaactccttatcccttagctcagaccagt 36472697  T
Q  191 tcagctatccaac 203  Q
    | ||||| |||||    
T  36472698 tgagctacccaac 36472710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 134
Target Start/End: Original strand, 18635664 - 18635706
Alignment:
Q  92 taatgacaaatgttagtaattagttgttagattaatttttctc 134  Q
    ||||| |||||||||||||||||||||||||| | ||||||||    
T  18635664 taatggcaaatgttagtaattagttgttagatcagtttttctc 18635706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 129
Target Start/End: Original strand, 22544581 - 22544618
Alignment:
Q  92 taatgacaaatgttagtaattagttgttagattaattt 129  Q
    ||||| |||||||||||| |||||||||||||||||||    
T  22544581 taatgtcaaatgttagtatttagttgttagattaattt 22544618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 129
Target Start/End: Original strand, 28308384 - 28308421
Alignment:
Q  92 taatgacaaatgttagtaattagttgttagattaattt 129  Q
    ||||||||||||||||||||||||||||| | ||||||    
T  28308384 taatgacaaatgttagtaattagttgttaaactaattt 28308421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 127
Target Start/End: Complemental strand, 10799304 - 10799276
Alignment:
Q  99 aaatgttagtaattagttgttagattaat 127  Q
    |||||||||||||||||||||||||||||    
T  10799304 aaatgttagtaattagttgttagattaat 10799276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 139
Target Start/End: Original strand, 43534637 - 43534685
Alignment:
Q  92 taatgacaaatgttagtaattagttgttagattaa-tttttctccttcg 139  Q
    |||||| ||||||||||||||| ||||| |||||| |||||||||||||    
T  43534637 taatgataaatgttagtaattatttgtttgattaattttttctccttcg 43534685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 128
Target Start/End: Original strand, 51697570 - 51697598
Alignment:
Q  100 aatgttagtaattagttgttagattaatt 128  Q
    |||||||||||||||||||||||||||||    
T  51697570 aatgttagtaattagttgttagattaatt 51697598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 92 - 202
Target Start/End: Complemental strand, 1652646 - 1652535
Alignment:
Q  92 taatgacaaatgttagtaattagttgttagattaatttttctccttcgcttgggtttgaacc-ggtacctccaactcctcaacccttagctcaaacctgt 190  Q
    ||||| |||||||| ||||||||||||||||||| ||||||||||||    |||||||||||  | |||||||| | || | ||||||||||||||| ||    
T  1652646 taatggcaaatgttggtaattagttgttagattagtttttctccttcatccgggtttgaacctaggacctccaatttcttatcccttagctcaaaccagt 1652547  T
Q  191 tcagctatccaa 202  Q
    | ||||| ||||    
T  1652546 tgagctacccaa 1652535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 92 - 129
Target Start/End: Original strand, 5251412 - 5251449
Alignment:
Q  92 taatgacaaatgttagtaattagttgttagattaattt 129  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  5251412 taatgtcaaatgttagtaattagttgttagattaattt 5251449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 92 - 131
Target Start/End: Original strand, 10223394 - 10223433
Alignment:
Q  92 taatgacaaatgttagtaattagttgttagattaattttt 131  Q
    ||||||||||||||||||||||||||||| ||| ||||||    
T  10223394 taatgacaaatgttagtaattagttgttaaattgattttt 10223433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 131
Target Start/End: Original strand, 7648722 - 7648760
Alignment:
Q  93 aatgacaaatgttagtaattagttgttagattaattttt 131  Q
    |||||||||| ||| ||||||||||||||||||||||||    
T  7648722 aatgacaaatattaataattagttgttagattaattttt 7648760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 127
Target Start/End: Complemental strand, 25728114 - 25728080
Alignment:
Q  93 aatgacaaatgttagtaattagttgttagattaat 127  Q
    |||||||||||||||| ||||||||||||||||||    
T  25728114 aatgacaaatgttagtgattagttgttagattaat 25728080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 185
Target Start/End: Original strand, 41508140 - 41508234
Alignment:
Q  93 aatgacaaatgttagtaattagttgttagattaat-ttttctccttcgcttgggtttgaac-cggtacctccaactcctcaacccttagctcaaa 185  Q
    ||||||||||||||| |||||||||||| |||||| ||| ||||||||   |||||||||| | | ||||| |||| || | |||||||||||||    
T  41508140 aatgacaaatgttagcaattagttgttatattaatatttactccttcgtccgggtttgaactcagaacctctaacttcttatcccttagctcaaa 41508234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 139
Target Start/End: Original strand, 13336239 - 13336279
Alignment:
Q  99 aaatgttagtaattagttgttagattaatttttctccttcg 139  Q
    ||||| || |||||||||||||||||| |||||||||||||    
T  13336239 aaatgataataattagttgttagattagtttttctccttcg 13336279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 197
Target Start/End: Original strand, 14195204 - 14195244
Alignment:
Q  157 acctccaactcctcaacccttagctcaaacctgttcagcta 197  Q
    ||||||||||||| ||||||||||||||||| ||| |||||    
T  14195204 acctccaactccttaacccttagctcaaaccagttgagcta 14195244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 139
Target Start/End: Complemental strand, 18283855 - 18283819
Alignment:
Q  103 gttagtaattagttgttagattaatttttctccttcg 139  Q
    |||||||||||||||||||| || |||||||||||||    
T  18283855 gttagtaattagttgttagaatagtttttctccttcg 18283819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 203
Target Start/End: Complemental strand, 32103669 - 32103577
Alignment:
Q  112 tagttgttagattaatttttctccttcgcttgggtttgaaccggt-acctccaactcctcaacccttagctcaaacctgttcagctatccaac 203  Q
    |||||||||||||| |||||| ||| ||    ||||||||||  | ||||||||||||||| ||||||||||||||  ||| ||||| |||||    
T  32103669 tagttgttagattactttttcacctccgtccaggtttgaacccatgacctccaactcctcatcccttagctcaaactagttgagctacccaac 32103577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 93 - 187
Target Start/End: Original strand, 50574742 - 50574840
Alignment:
Q  93 aatgacaaatgttagtaattagttgttagattaattttt---ctccttcgcttgggtttgaaccg-gtacctccaactcctcaacccttagctcaaacc 187  Q
    |||| |||||||||||||||||||||||||||| |||||   |||||||  | |||||| ||||  | ||||||||||||| | |||||||||||||||    
T  50574742 aatggcaaatgttagtaattagttgttagattagttttttttctccttcattcgggtttcaacccaggacctccaactccttatcccttagctcaaacc 50574840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 92 - 127
Target Start/End: Original strand, 48308089 - 48308124
Alignment:
Q  92 taatgacaaatgttagtaattagttgttagattaat 127  Q
    |||||||||||||||||| |||||||||||||||||    
T  48308089 taatgacaaatgttagtagttagttgttagattaat 48308124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 126
Target Start/End: Complemental strand, 40111801 - 40111767
Alignment:
Q  92 taatgacaaatgttagtaattagttgttagattaa 126  Q
    |||| ||||||||||||||||||||||||||||||    
T  40111801 taataacaaatgttagtaattagttgttagattaa 40111767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 141
Target Start/End: Original strand, 54913673 - 54913718
Alignment:
Q  98 caaatgttagtaattagttgttagatta--atttttctccttcgct 141  Q
    |||||||||||| |||||||||||||||  ||||||||||||||||    
T  54913673 caaatgttagtagttagttgttagattagtatttttctccttcgct 54913718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 126
Target Start/End: Original strand, 10428021 - 10428054
Alignment:
Q  93 aatgacaaatgttagtaattagttgttagattaa 126  Q
    ||||||||||||| ||||||||||||||||||||    
T  10428021 aatgacaaatgttcgtaattagttgttagattaa 10428054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 130
Target Start/End: Complemental strand, 32027289 - 32027253
Alignment:
Q  94 atgacaaatgttagtaattagttgttagattaatttt 130  Q
    ||||||||| |||||||||||||||||||||| ||||    
T  32027289 atgacaaatattagtaattagttgttagattagtttt 32027253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 127
Target Start/End: Original strand, 41737939 - 41737975
Alignment:
Q  91 gtaatgacaaatgttagtaattagttgttagattaat 127  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  41737939 gtaataacaaatattagtaattagttgttagattaat 41737975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 203
Target Start/End: Original strand, 33084908 - 33085015
Alignment:
Q  98 caaatgttagtaattagttgttagatta-atttttctccttcg-cttgggtttgaaccggtacctccaactcctcaacccttagctcaaacctgttcagc 195  Q
    ||||||||||||||||||||||||||||  ||||||||||||| |  || ||| | || | ||||||||||||  | ||||||||||||||| ||| |||    
T  33084908 caaatgttagtaattagttgttagattagttttttctccttcgtccaggttttaacccaggacctccaactccatatcccttagctcaaaccagttgagc 33085007  T
Q  196 tatccaac 203  Q
    || |||||    
T  33085008 tacccaac 33085015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 127
Target Start/End: Complemental strand, 37830033 - 37829999
Alignment:
Q  93 aatgacaaatgttagtaattagttgttagattaat 127  Q
    |||||||||||||||||||||||||||||||||||    
T  37830033 aatgacaaatgttagtaattagttgttagattaat 37829999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 7879048 - 7879105
Alignment:
Q  93 aatgacaaatgttagtaattagttgttagattaat-ttttctccttcgcttgggtttg 149  Q
    ||||||||||||||| ||||||||||||||||||| ||| ||||||||  ||||||||    
T  7879048 aatgacaaatgttagcaattagttgttagattaatatttactccttcgtctgggtttg 7879105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 95 - 153
Target Start/End: Original strand, 35451129 - 35451188
Alignment:
Q  95 tgacaaatgttagtaattagttgttagattaat-ttttctccttcgcttgggtttgaacc 153  Q
    |||||||||||| |||||||||||||||||||| ||| ||| |||| ||| |||||||||    
T  35451129 tgacaaatgttaataattagttgttagattaatatttactcattcgtttgagtttgaacc 35451188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 131
Target Start/End: Complemental strand, 31939693 - 31939655
Alignment:
Q  93 aatgacaaatgttagtaattagttgttagattaattttt 131  Q
    |||||||||| |||||||||||||||||||||| |||||    
T  31939693 aatgacaaatattagtaattagttgttagattagttttt 31939655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 203
Target Start/End: Original strand, 40778180 - 40778286
Alignment:
Q  93 aatgacaaatgttagtaattagttgttagattaatttttctccttcgcttgggtttgaaccggtacctccaactcctcaacccttagctcaaacctgttc 192  Q
    |||| ||||||||| |||||||||||| ||||| ||||||||||| | | ||||||     |  | ||||||||||| | ||||||| ||||||| ||||    
T  40778180 aatgccaaatgttattaattagttgttcgattagtttttctcctttgttcgggttt----tgagagctccaactccttatcccttagttcaaaccagttc 40778275  T
Q  193 agctatccaac 203  Q
    ||||| |||||    
T  40778276 agctacccaac 40778286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 132
Target Start/End: Original strand, 37882926 - 37882966
Alignment:
Q  92 taatgacaaatgttagtaattagttgttagattaatttttc 132  Q
    ||||||||||| | |||||||||||||||||||| ||||||    
T  37882926 taatgacaaatatcagtaattagttgttagattagtttttc 37882966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 93 - 187
Target Start/End: Complemental strand, 31957988 - 31957893
Alignment:
Q  93 aatgacaaatgttagtaattagttgttagattaatttttctccttcgcttgggtttgaa-ccggtacctccaactcctcaacccttagctcaaacc 187  Q
    |||| ||||||||| | |||||||||||||||| |||||||||||    ||||||| || || | ||||||||||||| | |||||||||||||||    
T  31957988 aatggcaaatgttaatgattagttgttagattagtttttctcctttatctgggtttcaacccaggacctccaactccttatcccttagctcaaacc 31957893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 131
Target Start/End: Complemental strand, 3535299 - 3535261
Alignment:
Q  93 aatgacaaatgttagtaattagttgttagattaattttt 131  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  3535299 aatgacaaatattagtaattagttgttagattaattttt 3535261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 98 - 131
Target Start/End: Complemental strand, 23402937 - 23402904
Alignment:
Q  98 caaatgttagtaattagttgttagattaattttt 131  Q
    ||||||||||||||||||||||||||||||||||    
T  23402937 caaatgttagtaattagttgttagattaattttt 23402904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 92 - 127
Target Start/End: Complemental strand, 2477320 - 2477285
Alignment:
Q  92 taatgacaaatgttagtaattagttgttagattaat 127  Q
    |||||||||||||||||||||| |||||||||||||    
T  2477320 taatgacaaatgttagtaattaattgttagattaat 2477285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 7099695 - 7099741
Alignment:
Q  92 taatgacaaatgttagtaattagttgttag-attaatttttctcctt 137  Q
    ||||||||||| |||||||||||||||||| ||||| ||||||||||    
T  7099695 taatgacaaatattagtaattagttgttagtattaacttttctcctt 7099741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 8794935 - 8794889
Alignment:
Q  92 taatgacaaatgttagtaattagttgttag-attaatttttctcctt 137  Q
    ||||||||||| |||||||||||||||||| ||||| ||||||||||    
T  8794935 taatgacaaatattagtaattagttgttagtattaacttttctcctt 8794889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 127
Target Start/End: Original strand, 3004848 - 3004876
Alignment:
Q  99 aaatgttagtaattagttgttagattaat 127  Q
    |||||||||||||||||||||||||||||    
T  3004848 aaatgttagtaattagttgttagattaat 3004876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 132
Target Start/End: Original strand, 30851475 - 30851507
Alignment:
Q  100 aatgttagtaattagttgttagattaatttttc 132  Q
    ||||||||| |||||||||||||||||||||||    
T  30851475 aatgttagtgattagttgttagattaatttttc 30851507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 92 - 131
Target Start/End: Original strand, 31014 - 31053
Alignment:
Q  92 taatgacaaatgttagtaattagttgttagattaattttt 131  Q
    ||||||||||| ||| ||||||||||||||||||||||||    
T  31014 taatgacaaatattattaattagttgttagattaattttt 31053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 127
Target Start/End: Complemental strand, 63486 - 63452
Alignment:
Q  93 aatgacaaatgttagtaattagttgttagattaat 127  Q
    |||||||||||||| ||||||||||||||||||||    
T  63486 aatgacaaatgttattaattagttgttagattaat 63452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University