View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14762_high_11 (Length: 330)
Name: NF14762_high_11
Description: NF14762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14762_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 36991535 - 36991220
Alignment:
| Q |
1 |
taaaattaaagcaaccccactaattcaaaaagttgaatactatttattaactatttcttggct---cccccaaccaaactaggtggtgttttcaaatgtt |
97 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
36991535 |
taaaattaaagcaaccccactaattcaaaaagttgaatactatttattaagtatttcttggcttcccccccaaccaaactaggtggtgttttcaaatgtt |
36991436 |
T |
|
| Q |
98 |
gcttgttgctgaaaaagattcaaaccctccattcttggttgaccaatttctccaaacctcatcagctgctgctgctgc---actttctgcctgttgttgt |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
36991435 |
gcttgttgctgaaaaagattcaaaccctccattcttggttgaccaatttctccaaacctcatcagctgctgctgctgctgcactttctgcctgttgttgt |
36991336 |
T |
|
| Q |
195 |
gtaccaccacctccatagaaattactatgtgcacctcctcctcctatccccaacaaatccagtgtcattacatctccaccacccttacttccactaatgt |
294 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36991335 |
gtaccacc---tccatagaaattactatgtgcacctcctcctcctatccccaacaaatccagtgtcattacatctccaccacccttacttccactaatgt |
36991239 |
T |
|
| Q |
295 |
tcataacattattactatt |
313 |
Q |
| |
|
||||||||||||||||||| |
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| T |
36991238 |
tcataacattattactatt |
36991220 |
T |
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