View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14762_high_16 (Length: 261)
Name: NF14762_high_16
Description: NF14762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14762_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 40 - 244
Target Start/End: Original strand, 48044136 - 48044340
Alignment:
| Q |
40 |
atttgtgatgcagattgtgacatgccatttggtgacgtgacatcactcttttattcattttatttgctggtaaataacatggcaaaatgccacatcaaca |
139 |
Q |
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| T |
48044136 |
atttgtgatgcagattgtgacatgccatttggtgacgtgccatcactcttttattcattttatttgctggtaaataacatggcaaaatgccacatcaaca |
48044235 |
T |
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| Q |
140 |
tagagagggagataggtcacgctaatttgatttgaataattctccgagtcaattaatagctagtaaggtgaggcttgaaacaagattgttcatgggacct |
239 |
Q |
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| T |
48044236 |
tagagagggagataggtcacgcttatttgatttgaataattctcagagtcaattaatagctagtaaggtgaggcttgaaacaagattgttcatgggacct |
48044335 |
T |
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| Q |
240 |
atgtt |
244 |
Q |
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||||| |
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| T |
48044336 |
atgtt |
48044340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 48 - 167
Target Start/End: Original strand, 48051839 - 48051958
Alignment:
| Q |
48 |
tgcagattgtgacatgccatttggtgacgtgacatcactcttttattcattttatttgctggtaaataacatggcaaaatgccacatcaacatagagagg |
147 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||| ||||| |
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| T |
48051839 |
tgcagattgtgacatgccatttggtgacgtgccatcactcttttattcattttatttgctggaaaataacatggcagtgtgccacatcagcatatagagg |
48051938 |
T |
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| Q |
148 |
gagataggtcacgctaattt |
167 |
Q |
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||||||| ||| |||||||| |
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| T |
48051939 |
gagatagatcatgctaattt |
48051958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 48044077 - 48044121
Alignment:
| Q |
1 |
tatcgtcttaatagttttcacattgatgcaattgattctatttgt |
45 |
Q |
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| T |
48044077 |
tatcgtcttaatagttttcacattgatgcaattgattctatttgt |
48044121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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