View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14762_high_6 (Length: 466)
Name: NF14762_high_6
Description: NF14762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14762_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 427; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 17 - 455
Target Start/End: Original strand, 41745524 - 41745962
Alignment:
| Q |
17 |
cacaattcagcaaaccaatgccatggattggaatctacatagcaacagcatcacttttatgtctcatttctatgtctgcagatctcattaaaggcatcaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
41745524 |
cacaattcagcaaaccaatgccatggattggaatctacatagcaacagcatcacttttatgtctcatttctatgtctgcagacctcattaaaggcatcaa |
41745623 |
T |
|
| Q |
117 |
aacccgcaaactatggttcccttgcaaatacttttgtctcaacgcaacttccttaaccataattgctgtttctttaaaactctcggttgatctcaacact |
216 |
Q |
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| T |
41745624 |
aacccgcaaactatggttcccttgcaaatacttttgtctcaacgcaacttccttaaccataatcgctgtttctttaaaactctcggttgatctcaacact |
41745723 |
T |
|
| Q |
217 |
cctatgcctcaccgtcatgatcagctaacgaaactagctagcagtgctttaatctgcacaatcatggctaattccatgccatctcttggtgtcacaccga |
316 |
Q |
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| T |
41745724 |
cctatgcctcaccgtcatgatcagctagcgaaactagctagcagtgctttaatctgcacaatcatggctaattccatgccatctcttggtgtcacaccga |
41745823 |
T |
|
| Q |
317 |
acaatgaaaccatgttgaatgttttggctatggctattttagtagttactatgattgttaatatctgtattcaatttggaactggggttatctatgagtt |
416 |
Q |
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| T |
41745824 |
acaatgaaaccatgttgaatgttttggctatggctattttagtagttactatgattgttaatatctgtattcaatttggaactggggttatctatgagtt |
41745923 |
T |
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| Q |
417 |
ttggattgaacatggtgttattatgtttcttatggttat |
455 |
Q |
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| T |
41745924 |
ttggattgaacatggtgttattatgtttcttatggttat |
41745962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 22 - 455
Target Start/End: Complemental strand, 41740231 - 41739798
Alignment:
| Q |
22 |
ttcagcaaaccaatgccatggattggaatctacatagcaacagcatcacttttatgtctcatttctatgtctgcagatctcattaaaggcatcaaaaccc |
121 |
Q |
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|||||||| |||||||||||||| ||| ||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
41740231 |
ttcagcaagccaatgccatggataggagtctacatagcaacagcatcacttttatctcttatttcaatgtctgcagatctcattaaaggcatcaaaaccc |
41740132 |
T |
|
| Q |
122 |
gcaaactatggttcccttgcaaatacttttgtctcaacgcaacttccttaaccataattgctgtttctttaaaactctcggttgatctcaacactcctat |
221 |
Q |
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| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| | |||||||| |||||||||||||||||||| |
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| T |
41740131 |
gaaaactatggttcccttgcaaatacttttgtctcaatgcaacttccttaaccataatcgctgtttccgtcaaactctccgttgatctcaacactcctat |
41740032 |
T |
|
| Q |
222 |
gcctcaccgtcatgatcagctaacgaaactagctagcagtgctttaatctgcacaatcatggctaattccatgccatctcttggtgtcacaccgaacaat |
321 |
Q |
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| T |
41740031 |
gcctcaccgtcatgatcagctagcaaagctagctagcagtgctatcatttgcactatcatggctaattctatgccttctcttggtgtgacgcagaacagt |
41739932 |
T |
|
| Q |
322 |
gaaaccatgttgaatgttttggctatggctattttagtagttactatgattgttaatatctgtattcaatttggaactggggttatctatgagttttgga |
421 |
Q |
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||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
41739931 |
gaaaccatgatgaatgttttggctatggctattttagtgattactatgattgttaatatttgtattcaatttggaactggggttatctatgagttttgga |
41739832 |
T |
|
| Q |
422 |
ttgaacatggtgttattatgtttcttatggttat |
455 |
Q |
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||||||| |||||||||||||||||||||||||| |
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| T |
41739831 |
ttgaacacggtgttattatgtttcttatggttat |
41739798 |
T |
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