View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14762_high_7 (Length: 458)
Name: NF14762_high_7
Description: NF14762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14762_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 28 - 439
Target Start/End: Complemental strand, 520153 - 519767
Alignment:
| Q |
28 |
gtgcatgtgtgtggagagaggacattaattaaaatattgaatatgcaagtatagatcctactcacttttgatttgatcatatatttattaattaatgaaa |
127 |
Q |
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| T |
520153 |
gtgcatatatgtggagagaggacattaattaaaatattgaatatgcaagtatagatcctactcacttttgatttgatcatatatt----aattaatgaaa |
520058 |
T |
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| Q |
128 |
ctcttttgtttatagttattgtcaaagttacgtgcaatgcattggtgctgtctgtgacacacacatggtaccatccatgcacatggagagtttttcattc |
227 |
Q |
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| T |
520057 |
ctcttttgtttatagttattgtcaaagttacgtgcaatgcattggtgctgtctgtgacacacacatggtaccat----gcacatggagagtttttcattc |
519962 |
T |
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| Q |
228 |
tccaaggttcttgttacaaacaactttttgatggtaagttgcaagggaccaaggggtcccggtccctctaagaaaaaccggtatggcattaattataatt |
327 |
Q |
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| T |
519961 |
tccaaggttgttgttacaaacaacttttagatggtaagttgcaagggaccaaggggtcccggtccctctaagaaaaaccggtatggcatta------att |
519868 |
T |
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| Q |
328 |
aatttttataaatatagcaaactgctaaaaagacaacagaaggaaagggaaaaggaagttcaataataatttaatgatggaaatgttaattcctgctcac |
427 |
Q |
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| T |
519867 |
aatttatataaatatagcaaactgctaaaaagac-----------agggaaaaggaagttcaataataatttaacgatggaaatattaattcctgctcac |
519779 |
T |
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