View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14762_high_9 (Length: 372)
Name: NF14762_high_9
Description: NF14762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14762_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 9 - 354
Target Start/End: Original strand, 48043227 - 48043572
Alignment:
| Q |
9 |
gaagaatattgtgaacctgtatggtaggtaaataagtataatactctctttgatacctttgttggtaaacctagttatcacaggctatcagattggattt |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
48043227 |
gaagaatattgtgaacctgtatggtaggtaaataagtataatactctctttgatacctttgttggtaaacctagttattacaagctatcagattggattt |
48043326 |
T |
|
| Q |
109 |
aaagccagtcaaatatggaaaagaaaaactagtagtatgatacaccaatatcatcccttcgatgaccttgatatcagtctgcaatgtaacattcaaatag |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
48043327 |
aaagccagtcaaatatggaaaagaaaaactagtagtatgatacaccaatatcatcccttcaatgaccttgatatcagtctgcaatgtaacattcaaatag |
48043426 |
T |
|
| Q |
209 |
attcatatggcagaagttgagagcttcagttgtttgctttagaatgttttacaaaccgacaaattactgagtcaatgttgttggagtttttacatgagat |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48043427 |
attcatatggcagaagttgagagcttcagttgtttgctttagaatgttttacaaaccgacaaattactgagtcaatgttgttggagtttttacatgagat |
48043526 |
T |
|
| Q |
309 |
catgatgtaacaaacttccctcccattgattgatttcagtcccctg |
354 |
Q |
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| T |
48043527 |
catgatgtaacaaacttccctcccattgattgatttcagtcccctg |
48043572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 151 - 349
Target Start/End: Original strand, 48056587 - 48056785
Alignment:
| Q |
151 |
caccaatatcatcccttcgatgaccttgatatcagtctgcaatgtaacattcaaatagattcatatggcagaagttgagagcttcagttgtttgctttag |
250 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||| ||||| |||| |
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| T |
48056587 |
caccaatatcatcccttcaatgaccttgatatcagtctgcaatgtaacattcaaatagaatcctagggcagaagttgagagcttcagttctttgcgttag |
48056686 |
T |
|
| Q |
251 |
aatgttttacaaaccgacaaattactgagtcaatgttgttggagtttttacatgagatcatgatgtaacaaacttccctcccattgattgatttcagtc |
349 |
Q |
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| T |
48056687 |
aatgttttacaaaccaacaaataactgagtcgatgttggtggagtttttacttgagatcatgatgcaacaaacttctctctcatttattgatttcagtc |
48056785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 152 - 332
Target Start/End: Original strand, 48051312 - 48051480
Alignment:
| Q |
152 |
accaatatcatcccttcgatgaccttgatatcagtctgcaatgtaacattcaaatagattcatatggcagaagttgagagcttcagttgtttgctttaga |
251 |
Q |
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||||| |||||| |||| | ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
48051312 |
accaacatcatctcttcaaagaccttgatatcagtctgcaatgtaacattcaaattgattcatatggcaagagttgagagcttcaattgtttgctttaga |
48051411 |
T |
|
| Q |
252 |
atgttttacaaaccgacaaattactgagtcaatgttgttggagtttttacatgagatcatgatgtaacaaacttccctccc |
332 |
Q |
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| T |
48051412 |
atgtttt------------ataactgagtccatgttgttggagtttttacacgagatcatgatgtaacaaacttccctccc |
48051480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 160 - 355
Target Start/End: Original strand, 48037329 - 48037529
Alignment:
| Q |
160 |
catcccttcgatgaccttgatatcagtctgcaatgtaacattcaaatagattcatatggcagaag-ttgagagcttcagttgtttgctttagaatgtttt |
258 |
Q |
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||||||| | ||||| ||||||||||||||||||| |||||||||||||||||| | |||||||| |||||||||| |||| |||||||||||||| ||| |
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| T |
48037329 |
catccctaccatgacattgatatcagtctgcaatgcaacattcaaatagattcacagggcagaagtttgagagcttaagttctttgctttagaatgcttt |
48037428 |
T |
|
| Q |
259 |
acaaaccgacaaattactgagtc----aatgttgttggagtttttacatgagatcatgatgtaacaaacttccctcccattgattgatttcagtcccctg |
354 |
Q |
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||||| | || ||| |||||||| ||||||| || ||||||||||||||||||||| | |||||||||| || ||||||| |||| |||||||||| |
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| T |
48037429 |
acaaatcaactaataactgagtcaattaatgttggtgaagtttttacatgagatcatgaagcaacaaacttctctttcattgatggattccagtcccctg |
48037528 |
T |
|
| Q |
355 |
a |
355 |
Q |
| |
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| |
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|
| T |
48037529 |
a |
48037529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 173 - 307
Target Start/End: Original strand, 48045200 - 48045331
Alignment:
| Q |
173 |
accttgatatcagtctgcaatgtaacattcaaatagattcatatggcagaagttgagagcttcagttgtttgctttag---aatgttttacaaaccgaca |
269 |
Q |
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|||||||||||| ||||||||| |||||||||||||||||||| ||||| ||||||| |||| |||||||||| ||||||||||||| | || |
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| T |
48045200 |
accttgatatcaatctgcaatgcaacattcaaatagattcatagggcaggagttgag------agttctttgctttagaaaaatgttttacaaagcaacg |
48045293 |
T |
|
| Q |
270 |
aattactgagtcaatgttgttggagtttttacatgaga |
307 |
Q |
| |
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|| |||||| |||||||| || ||||||||||||||| |
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| T |
48045294 |
cataactgagccaatgttggtgtagtttttacatgaga |
48045331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 48051132 - 48051209
Alignment:
| Q |
9 |
gaagaatattgtgaacctgtatggtaggtaaataagtataatactctctttgatacctttgttggtaaacctagttatcaca |
90 |
Q |
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||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
48051132 |
gaagaatgttgtgaacctgaatggta----aataagtataatactctctttgatacctttgttggtaaaccaagctatcaca |
48051209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 297 - 354
Target Start/End: Original strand, 48051481 - 48051538
Alignment:
| Q |
297 |
tttacatgagatcatgatgtaacaaacttccctcccattgattgatttcagtcccctg |
354 |
Q |
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|||||| |||||||||||||||||||||||| |||||| |||||||||||||||||| |
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| T |
48051481 |
tttacacgagatcatgatgtaacaaacttccttcccatatattgatttcagtcccctg |
48051538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 88
Target Start/End: Original strand, 48056456 - 48056532
Alignment:
| Q |
9 |
gaagaatattgtgaacctgtatggtaggtaaataagtataatactctctttgatacctttgttggtaaacctagttatca |
88 |
Q |
| |
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||||||||||||||| ||| |||||| ||| |||||| | |||||||||||||||||| ||||||||| |||||||| |
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| T |
48056456 |
gaagaatattgtgaatctgaatggtatataagtaagtaga---ctctctttgatacctttgatggtaaaccaagttatca |
48056532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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