View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14762_low_1 (Length: 876)
Name: NF14762_low_1
Description: NF14762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14762_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 156; Significance: 2e-82; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 522 - 737
Target Start/End: Complemental strand, 29998870 - 29998644
Alignment:
| Q |
522 |
ttggacgtcctagttgcagtgattggnnnnnnntcgagcttttgctggctttttgaagattttctatgatgtcacgaaggttttctctttgtcctaacaa |
621 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
29998870 |
ttggacgtcctagttgcagtgattggaaaaaaatcgagcttttgctggctttttgaagattttctatgatgtcacgaaggttttctcttcatcctaacaa |
29998771 |
T |
|
| Q |
622 |
gtttcattgcacact-----------taagtgaacttaatgcaacaactttgaacttgaattctatttttgcctcaatgttgcagaaacatgacaagtat |
710 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29998770 |
gtttcattgcacactcacttttgtattaagtgaacttaatgcaacaactttgaacttgaattctatttttgcctcaatgttgcagaaacatgacaagtat |
29998671 |
T |
|
| Q |
711 |
tgggacagtgtaaacaaaactaatcaa |
737 |
Q |
| |
|
||| ||||||||||||||||||||||| |
|
|
| T |
29998670 |
tggaacagtgtaaacaaaactaatcaa |
29998644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 780 - 860
Target Start/End: Complemental strand, 29998601 - 29998521
Alignment:
| Q |
780 |
agttcagagatattgagtggtcatttgatcaagtttatgaggttggaagtgacatttcaaaagacatggccaagaatgtta |
860 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29998601 |
agttcagagatattgagtggtcatttgatcaagtttatgaggttggaagtgacatttcaaaagacatggccaagaatgtta |
29998521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University