View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14762_low_12 (Length: 457)
Name: NF14762_low_12
Description: NF14762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14762_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 2 - 438
Target Start/End: Original strand, 17232129 - 17232565
Alignment:
| Q |
2 |
tgtatgtggtatgactttttatacttttgaataggtacgtgatttcggattatctcgaaggaagtacaatacgtaccttactcatagaacagacatggga |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17232129 |
tgtatgtggtatgactttttatacttttgaataggtacgtgatttcggattatctcgaaggaagtacaatacgtaccttactcatagaacagacatggga |
17232228 |
T |
|
| Q |
102 |
acagtaagctatcgtaattttttattaatcaattcattttttatatcctcctgattgaatgttcatgttacatatttttcgggctcggtggatggctccc |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
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| T |
17232229 |
acagtaagctatcgtaattttttattaatcaattcattttttatatcctcctgattgaatgttcatgttacatatttttcggcctcagtggatggctccc |
17232328 |
T |
|
| Q |
202 |
gaagtattgcaaagtgaactgtatgatgaaaagtaagcttgttattctttgtatttattattatgttgctacaaaatgaatgaatgattaacacattgtt |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17232329 |
gaagtattgcaaagtgaactgtatgatgaaaagtaagcttgttattctttgtatttattattatgttgctacaaaatgaatgaatgattaacacattgtc |
17232428 |
T |
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| Q |
302 |
ggattcattttataggtgtgatgttttaagctatggggtcatcttatgggagctctttgccaagcaaaaacactgacattatgaatccgacaatgaatcc |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17232429 |
ggattcattttataggtgtgatgttttaagctatggggtcatcttatgggagctctttgccaagcaaaaacactgacattatgaatccgacaatgaatcc |
17232528 |
T |
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| Q |
402 |
ataccgagttatttatcatgttggcgaggaggatggt |
438 |
Q |
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| T |
17232529 |
ataccgagttatttatcatgttggcgaggaggatggt |
17232565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 96; Significance: 7e-47; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 222 - 358
Target Start/End: Original strand, 1251243 - 1251383
Alignment:
| Q |
222 |
gtatgatgaaaagtaagcttgttattctttgtatttattattatgttgctacaaaatg----aatgaatgattaacacattgttggattcattttatagg |
317 |
Q |
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|||||||||||||||||||||||| |||||||||||||||| || ||||||||||||| ||||||||||||||||||||| ||||||||||| |||| |
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| T |
1251243 |
gtatgatgaaaagtaagcttgttaatctttgtatttattataatattgctacaaaatgaatgaatgaatgattaacacattgtcggattcattttttagg |
1251342 |
T |
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| Q |
318 |
tgtgatgttttaagctatggggtcatcttatgggagctctt |
358 |
Q |
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| T |
1251343 |
tgtgatgtttttagctatgaggtcatcttatgggagctctt |
1251383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 273 - 367
Target Start/End: Original strand, 15021710 - 15021803
Alignment:
| Q |
273 |
caaaatgaatgaatgattaacacattgttggattcattttataggtgtgatgttttaagctatggggtcatcttatgggagctctttgccaagca |
367 |
Q |
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| T |
15021710 |
caaaatgaatgagtgatcaacacattgtcg-attcattttgtaggtgtgatgtttttagttatggggtcatcttatgggagctctttaccaagca |
15021803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 273 - 367
Target Start/End: Original strand, 15028828 - 15028921
Alignment:
| Q |
273 |
caaaatgaatgaatgattaacacattgttggattcattttataggtgtgatgttttaagctatggggtcatcttatgggagctctttgccaagca |
367 |
Q |
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| T |
15028828 |
caaaatgaatgagtgatcaacacattgtcg-attcattttgtaggtgtgatgtttttagttatggggtcatcttatgggagctctttaccaagca |
15028921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 273 - 367
Target Start/End: Original strand, 15007593 - 15007686
Alignment:
| Q |
273 |
caaaatgaatgaatgattaacacattgttggattcattttataggtgtgatgttttaagctatggggtcatcttatgggagctctttgccaagca |
367 |
Q |
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| T |
15007593 |
caaaatgaatgagtgatcaacacattgtcg-attcattttgtaggtgtgatatttttagttatggggtcatcttatgggagctctttaccaagca |
15007686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 395 - 437
Target Start/End: Original strand, 1251415 - 1251457
Alignment:
| Q |
395 |
tgaatccataccgagttatttatcatgttggcgaggaggatgg |
437 |
Q |
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| T |
1251415 |
tgaattcataccgaattatttatcatgttggcgaggaggatgg |
1251457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 395 - 437
Target Start/End: Original strand, 15007704 - 15007746
Alignment:
| Q |
395 |
tgaatccataccgagttatttatcatgttggcgaggaggatgg |
437 |
Q |
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|||||| ||| |||||||||||||||||||| ||||||||||| |
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| T |
15007704 |
tgaatctatatcgagttatttatcatgttggtgaggaggatgg |
15007746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 173 - 359
Target Start/End: Original strand, 45204670 - 45204856
Alignment:
| Q |
173 |
atatttttcgggctcggtggatggctcccgaagtattgcaaagtgaactgtatgatgaaaagtaagcttgttattctttgtatttattattatgttgcta |
272 |
Q |
| |
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||||||||| |||| |||||||||||| ||||| ||| || ||||| | ||||||||||||| |||||||||| |||||||||||||| |||||| |
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| T |
45204670 |
atatttttcaggctgagtggatggctccagaagtgttgagaaacgaactttcagatgaaaagtaagattgttattctcggtatttattattatattgcta |
45204769 |
T |
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| Q |
273 |
caaaatgaatgaatgattaacacattgttggattcattttataggtgtgatgttttaagctatggggtcatcttatgggagctcttt |
359 |
Q |
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| T |
45204770 |
taaaatgaatgaatgattaaaacattatcggattcattttgtaggtgtgatgtttttagctatggggtcatattatgggagctcttt |
45204856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 170
Target Start/End: Complemental strand, 38946348 - 38946301
Alignment:
| Q |
123 |
ttattaatcaattcattttttatatcctcctgattgaatgttcatgtt |
170 |
Q |
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|||| |||||||||||| |||||||| |||| |||||||||||||||| |
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| T |
38946348 |
ttatcaatcaattcattctttatatcatccttattgaatgttcatgtt |
38946301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 38946474 - 38946403
Alignment:
| Q |
2 |
tgtatgtggtatgactttttatacttttgaataggtacgtgatttcggattatctcgaaggaagtacaatac |
73 |
Q |
| |
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||||| |||||||||||||| |||||||||||||||| | |||||| ||||||| || |||||| ||||| |
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| T |
38946474 |
tgtatatggtatgactttttttacttttgaataggtatgcgatttcaacttatctcaaatgaagtataatac |
38946403 |
T |
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